User: apulunuj

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apulunuj0
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Posts by apulunuj

<prev • 15 results • page 1 of 2 • next >
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Comment: C: Use of uninitialized value error in Perl Script
... Thank you I fixed it now, it was the blast format. ...
written 5 weeks ago by apulunuj0
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Use of uninitialized value error in Perl Script
... I am making use of a perl script for a pipeline and I'm getting the following error message. I don't know what to do. The error message I'm getting is: Use of uninitialized value $qulen in division (/) at FAST_kspipe.pl line 167, <$blast_file> line 7. Illegal division by zero at FAST_kspipe. ...
perl written 5 weeks ago by apulunuj0 • updated 5 weeks ago by Ram12k
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Comment: C: Python Script for extracting out Query and Alignment sequence from an all_v_all
... The code and Pierre helped. Thanks a bunch! ...
written 7 weeks ago by apulunuj0
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Comment: C: Python Script for extracting out Query and Alignment sequence from an all_v_all
... Thank you this worked. ...
written 7 weeks ago by apulunuj0
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Comment: C: Python Script for extracting out Query and Alignment sequence from an all_v_all
... I debugged it the output is empty, but everything else shows results when I use the print command. ...
written 7 weeks ago by apulunuj0
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Comment: C: Python Script for extracting out Query and Alignment sequence from an all_v_all
... The script runs completely. However, the output file 'blast_output' is empty. ...
written 7 weeks ago by apulunuj0
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Comment: C: Python Script for extracting out Query and Alignment sequence from an all_v_all
... I checked that, the list index seems to be correct. But I'm still not getting any output. I find it very puzzling. ...
written 7 weeks ago by apulunuj0
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Python Script for extracting out Query and Alignment sequence from an all_v_all Blast
... I have some blast output in tsv format. The first column is the query_id, the second is the subject_id, and the third column is the alignment. An example format of the data is: Dictyostelium_gi | 550558531 | gb | Dictyostelium_gi | 550558531 |gb YKLADEQWSTTILLIMCQE.. Dictyostel ...
python blast written 7 weeks ago by apulunuj0 • updated 7 weeks ago by Pierre Lindenbaum101k
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Comment: C: Substitution Error in pal2nal perl script
... perl 5.10.1 is what I am using/ ...
written 9 weeks ago by apulunuj0
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Substitution Error in pal2nal perl script
... I need some help in understanding how to work, the pal2nal.pl script. The program can be obtained from the website, http://www.bork.embl.de/pal2nal/. Whenever I run the script I get an error message at the line, (the line of interest has a comment beside it). THe error message says 'Substitution l ...
nucleotide seq perl script alignment written 9 weeks ago by apulunuj0 • updated 9 weeks ago by WouterDeCoster23k

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