User: Joe.waldron

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Posts by Joe.waldron

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Comment: C: Differences between archived versions of ensembl
... OK thanks very much for your reply ...
written 4 months ago by Joe.waldron0
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Comment: C: refseq transcriptome annotation
... OK Thanks very much for your reply ...
written 4 months ago by Joe.waldron0
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Differences between archived versions of ensembl
... Does anyone know how much difference there is between each version of the ensembl transcriptome? Our collaborator has recently analysed some RNA-seq data for us but he mapped to ensemble 75 for this. This is from Feb 2014 and part of GRCh37. Does anyone know if this is an issue or if it would be alm ...
ensembl alignment rna-seq written 4 months ago by Joe.waldron0 • updated 4 months ago by Emily_Ensembl14k
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Comment: C: refseq transcriptome annotation
... humans ...
written 4 months ago by Joe.waldron0
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Comment: C: refseq transcriptome annotation
... We're particularly interested in 5'UTRs and I've read that the annotation of 5' ends is better in refseq ...
written 4 months ago by Joe.waldron0
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refseq transcriptome annotation
... I have some next generation sequencing data that I am planning to map to the refseq transcriptome. However, the FASTA file that I have dowloaded doesn't have the positions of the UTRs/CDSs unlike the GENCODE FASTA which does have this information. I have been struggling to find the annotation for th ...
assembly rna-seq sequencing written 4 months ago by Joe.waldron0

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