User: skjobs0123

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skjobs0123170
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Posts by skjobs0123

<prev • 31 results • page 1 of 4 • next >
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Comment: C: Survival analysis with gene expression
... Hi Kevin How calculate FDA in COX-PH regression!!!? ...
written 7 weeks ago by skjobs0123170
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Survival analysis using COX-PH
... How do calculate FRD value from p-value using COX-PH. Is there any direct function in R to calculate FDR value. using this script given below BRCA <- read.table("BRCA.txt", header = TRUE, sep=',') fit_model <- survfit(Surv(OS_MONTHS, OS_STATUS) ~ SEX, data = file) summary(fit_mod ...
R written 7 weeks ago by skjobs0123170
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Heatmap position amplification
... Hi, I have a heatmap which is generated by complexheatmap R library. We have 3 clusters (cluster1, cluster2 and cluster3) in a heatmap in figure. I want to further amplify the cluster3 only. ![heatmap][1] [1]: https://i.ibb.co/pLpb0fM/Rplot056.png ...
R rna-seq written 9 months ago by skjobs0123170 • updated 9 months ago by GenoMax94k
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Comment: C: Downstream RNA seq analysis
... You can do a lots of things in down stream process such as gene ontology, pathways analysis, protein protein interaction or you can see how many of the genes are belong to which classes of protein and family. The question is very generic please make precise. What really you want. ...
written 11 months ago by skjobs0123170
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Comment: C: Get nucleotide sequence from protein refseq
... Use biodbnet to convert biological ID and then you can fetch from entrez or other site. https://biodbnet-abcc.ncifcrf.gov/db/db2db.php ...
written 12 months ago by skjobs0123170
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Comment: C: How to plot gene_names besides CpGs in microarray methylation heatmap?
... Use this code to generate heatmap # Use RColorBrewer color palette names library("RColorBrewer") col <- colorRampPalette(brewer.pal(10, "RdYlBu"))(256) heatmap(df, scale = "none", col = col, RowSideColors = rep(c("blue", "pink"), each = 16), ...
written 12 months ago by skjobs0123170
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Comment: C: How to get PPI result quickly using bisogenet in Cytoscape?
... Use HIPPIE database ([http://cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/][1]) for PPI interaction, Or string. First, mapped Gene ID with these database and then upload table into Cytoscape. Further, you can do whatever you want. [1]: http://cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/ ...
written 12 months ago by skjobs0123170
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Comment: C: query on salmon installation
... then set the PATH in ~/.bashrc ...
written 12 months ago by skjobs0123170
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Comment: C: scRNA-seq reduction plot for individual group
... You can use this tutorial [http://cole-trapnell-lab.github.io/monocle-release/monocle3/][1] ...
written 12 months ago by skjobs0123170
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Comment: C: Normalization of NGS data generated from different platforms of microRNAs
... Thanks, Samples are not homogeneous like: Sample Condition Machine 1 Control Hiseq 2 Control Hiseq 3 Control Nextseq 4 Control Nextseq 5 Treatment Hiseq 6 Treatment Hiseq 7 Treat ...
written 12 months ago by skjobs0123170

Latest awards to skjobs0123

Popular Question 3 months ago, created a question with more than 1,000 views. For WGCNA Network Analysis
Popular Question 8 months ago, created a question with more than 1,000 views. For WGCNA Network Analysis
Commentator 13 months ago, created a comment with at least 3 up-votes. For A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data

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