User: skjobs0123

gravatar for skjobs0123
skjobs012340
Reputation:
40
Status:
New User
Location:
Last seen:
5 hours ago
Joined:
2 years, 2 months ago
Email:
s*********@gmail.com

Posts by skjobs0123

<prev • 14 results • page 1 of 2 • next >
0
votes
4
answers
56k
views
4
answers
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... Why there is huge difference between estimated survival from this script and from cbioportal (https://www.cbioportal.org/)? How to modify this script to estimate survival similar like cbioportal. (https://www.cbioportal.org/) ...
written 23 hours ago by skjobs012340
0
votes
4
answers
56k
views
4
answers
Answer: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... Can you use all possible cutoff value between the lower and upper quartiles to compute and the best performing threshold to use as a cutoff?. Rather than using the simple medium value of gene expression. If yes then, how to modify the above script? I seen lots of difference in survival using med ...
written 11 weeks ago by skjobs012340
0
votes
1
answer
174
views
1
answers
Comment: C: Standardised to a mean of 0 and standard deviation 1
... Mean of 0 and standard deviation 1 is it means Z-Score of normal distribution? ...
written 4 months ago by skjobs012340
0
votes
1
answer
174
views
1
answers
Comment: C: Standardised to a mean of 0 and standard deviation 1
... I was trying to normalized the different transcriptomics expression such as miRNA, mRAN and mutations data. ...
written 4 months ago by skjobs012340
5
votes
1
answer
174
views
1
answer
Standardised to a mean of 0 and standard deviation 1
... How to normalize the data set in R using the "Standardized to a mean of 0 and standard deviation 1"? I have a TCGA expression data and want to normalized like above equations. Please write code of R if possible. ...
R written 4 months ago by skjobs012340 • updated 4 months ago by ATpoint26k
0
votes
1
answer
330
views
1
answers
Comment: C: GETx patient RNA_Seq read count download
... It's not the TCGA data, It's something else. It's GTEx data has only normal tissue expression. In TCGA there are very few number of normal samples. In GTEx has larger number of normal as compare to TCGA. ...
written 10 months ago by skjobs012340
1
vote
1
answer
330
views
1
answer
GETx patient RNA_Seq read count download
... I'm trying to download the STAD tissue RNA-Seq read count of individual patients. I didn't find any link / source to directly download the tissue specific data Example P_ID P1 P2 P3 Pn.. Gene1/trns 12.0 5.0 0 ....n Gene2 /trans 7.0 ...
genome rna-seq written 10 months ago by skjobs012340 • updated 10 months ago by kristoffer.vittingseerup2.9k
9
votes
2
answers
629
views
2
answers
WGCNA Network Analysis
... I'm trying to use WGCNA for weighted network analysis. I'm getting trouble how to decide this parameter. It's clear how to define and why this has been defined. #Choosing a soft-threshold to fit a scale-free topology to the network powers = c(c(1:10), seq(from = 12, to=20, by=2)); What is ...
R wgcna written 11 months ago by skjobs012340 • updated 11 months ago by Renesh1.8k
3
votes
4
answers
56k
views
4
answers
Answer: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... How can perform survival analysis more than one genes like (TP53+PIK3) ...
written 11 months ago by skjobs012340
0
votes
4
answers
56k
views
4
answers
Comment: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... Hey, I'm getting error in this script > if (x1 != 'NA' & x2 != 'NA'){ >   lines(c(0,x1),c(0.5,0.5),col='blue') >   lines(c(x1,x1),c(0,0.5),col='black') >   lines(c(x2,x2),c(0,0.5),col='red') > } Getting such error in my R console > if (x1 != 'NA ...
written 15 months ago by skjobs012340

Latest awards to skjobs0123

Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1496 users visited in the last hour