User: skjobs0123
skjobs0123 • 0
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Posts by skjobs0123
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... It's not the TCGA data, It's something else. It's GTEx data has only normal tissue expression. In TCGA there are very few number of normal samples. In GTEx has larger number of normal as compare to TCGA. ...
written 4 days ago by
skjobs0123 • 0
1
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1
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106
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... I'm trying to download the STAD tissue RNA-Seq read count of individual patients. I didn't find any link / source to directly download the tissue specific data
Example
P_ID P1 P2 P3 Pn..
Gene1/trns 12.0 5.0 0 ....n
Gene2 /trans 7.0 ...
written 4 days ago by
skjobs0123 • 0
• updated
3 days ago by
kristoffer.vittingseerup • 1.2k
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178
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... I'm trying to use WGCNA for weighted network analysis. I'm getting trouble how to decide this parameter. It's clear how to define and why this has been defined.
#Choosing a soft-threshold to fit a scale-free topology to the network
powers = c(c(1:10), seq(from = 12, to=20, by=2));
What is ...
written 5 weeks ago by
skjobs0123 • 0
• updated
5 weeks ago by
Renesh • 1.5k
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... How can perform survival analysis more than one genes like (TP53+PIK3) ...
written 5 weeks ago by
skjobs0123 • 0
0
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45k
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... Hey,
I'm getting error in this script
> if (x1 != 'NA' & x2 != 'NA'){
> lines(c(0,x1),c(0.5,0.5),col='blue')
> lines(c(x1,x1),c(0,0.5),col='black')
> lines(c(x2,x2),c(0,0.5),col='red')
> }
Getting such error in my R console
> if (x1 != 'NA ...
written 4 months ago by
skjobs0123 • 0
0
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... Yes... Similar file I have which u written.. ...
written 4 months ago by
skjobs0123 • 0
0
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314
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... Yes, I have multiple files and want to do with mutation multiple times in a single file. ...
written 4 months ago by
skjobs0123 • 0
11
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1
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314
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1
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... Dear All,
I have a bunch of position specific mutation file and sequences file both. I want to mutate that sequences with given position as examples
Mutation Position
G10M (at position of 10 mutated G to M) Similarly
Y70K ( at position of 70 residue mutated Y to K
>P00519
MLEICLK ...
written 4 months ago by
skjobs0123 • 0
• updated
4 months ago by
jrj.healey ♦ 9.8k
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... I'm working on miRNA data analysis from GDC and getting error given below
vm <- function(x){
+ cond <- factor(ifelse(seq(1,dim(x)[2],1) %in% t_index, 1, 0))
+ d <- model.matrix(~1+cond)
+ x <- t(apply(x,1,as.numeric))
+ ex <- voom(x,d,plot=F)
...
written 7 months ago by
skjobs0123 • 0
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