User: qudrat

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qudrat70
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70
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NATIONAL INSTITUTE OF IMMUNOLOGY, INDIA
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1 year ago
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1 year, 9 months ago
Email:
q*****@nii.ac.in

Can somebody tell me how mask gtf file is generated?

Posts by qudrat

<prev • 81 results • page 1 of 9 • next >
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sratoolkit and download
... Hello all, I have been trying to download a .sra file of 20GB using "wget" and "curl" command but due to bad connectivity of internet I am unable to download. I also tryied prefetch and fastq-dump but it did not work (it did work for smaller file). Please suggest me how to proceed. Thank you ...
download and wget written 12 months ago by qudrat70 • updated 12 months ago by grant.hovhannisyan1.6k
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wget and download
... Hello all, I am trying to download a .sra file using wget command but every time the connection is closed and it retry and download is never complete. Please help me. ...
download written 13 months ago by qudrat70 • updated 13 months ago by grant.hovhannisyan1.6k
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5 follow
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Cufflinks and StringTie
... Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to identify the transcripts detected by both assemblers. ...
assembly rna-seq written 15 months ago by qudrat70 • updated 15 months ago by Hussain Ather920
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stringtie and fpkm and coverage
... Hello all, I have assembled transcripts from a tissue using StringTie and I want to filter transcripts so that I can get rid of false positive results. What value should I consider fpkm or coverage and what should be minimum threshold? ...
assembly rna-seq written 15 months ago by qudrat70
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Comment: A: hisat2 analysis and cuffdiff
... Actually the aim of experiment is to find differentially expressed genes between a drug treated and a non-treated cell line sample. Two BAM file were produced; one for each sample using HISAT2, now I want to see the differentially expressed genes. ...
written 15 months ago by qudrat70
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Comment: C: hisat2 analysis and cuffdiff
... I can include more BAM file in my study, then would it be possible to use Cuffdiff? ...
written 15 months ago by qudrat70
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5 follow
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hisat2 analysis and cuffdiff
... Hello all, I have two BAM files obtained by HISAT2 and I want to see differential expression of some genes. Can I use Cuffdiff to see the differential expression? ...
rna-seq differential expression written 15 months ago by qudrat70
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6 follow
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Cufflinks and fpkm
... Hello guys, Can somebody suggest me how to choose cut off fpkm value for a list transcripts generated from Cufflinks. ...
gene rna-seq written 15 months ago by qudrat70 • updated 15 months ago by Kevin Blighe44k
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gtf file and rnaseq
... Hello all I was wondering to ask whether there are any method to find common transcripts between two gtf file? I have produced gtf files from StringTie and I am interested in to proceed forward with common transcripts. ...
alignment rna-seq written 15 months ago by qudrat70 • updated 15 months ago by Buffo1.6k
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Cufflinks and StringTie
... Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to see the common transcripts between these two software. ...
assembly rna-seq written 16 months ago by qudrat70 • updated 16 months ago by andrew.j.skelton735.7k

Latest awards to qudrat

Supporter 19 months ago, voted at least 25 times.
Rising Star 19 months ago, created 50 posts within first three months of joining.

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