User: qudrat

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qudrat50
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50
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Location:
NATIONAL INSTITUTE OF IMMUNOLOGY, INDIA
Last seen:
1 month, 1 week ago
Joined:
10 months ago
Email:
q*****@nii.ac.in

Can somebody tell me how mask gtf file is generated?

Posts by qudrat

<prev • 81 results • page 1 of 9 • next >
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sratoolkit and download
... Hello all, I have been trying to download a .sra file of 20GB using "wget" and "curl" command but due to bad connectivity of internet I am unable to download. I also tryied prefetch and fastq-dump but it did not work (it did work for smaller file). Please suggest me how to proceed. Thank you ...
download and wget written 5 weeks ago by qudrat50 • updated 5 weeks ago by grant.hovhannisyan900
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wget and download
... Hello all, I am trying to download a .sra file using wget command but every time the connection is closed and it retry and download is never complete. Please help me. ...
download written 8 weeks ago by qudrat50 • updated 8 weeks ago by grant.hovhannisyan900
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5 follow
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Cufflinks and StringTie
... Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to identify the transcripts detected by both assemblers. ...
assembly rna-seq written 3 months ago by qudrat50 • updated 3 months ago by Hussain Ather880
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stringtie and fpkm and coverage
... Hello all, I have assembled transcripts from a tissue using StringTie and I want to filter transcripts so that I can get rid of false positive results. What value should I consider fpkm or coverage and what should be minimum threshold? ...
assembly rna-seq written 4 months ago by qudrat50
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Comment: A: hisat2 analysis and cuffdiff
... Actually the aim of experiment is to find differentially expressed genes between a drug treated and a non-treated cell line sample. Two BAM file were produced; one for each sample using HISAT2, now I want to see the differentially expressed genes. ...
written 4 months ago by qudrat50
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Comment: C: hisat2 analysis and cuffdiff
... I can include more BAM file in my study, then would it be possible to use Cuffdiff? ...
written 4 months ago by qudrat50
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5 follow
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hisat2 analysis and cuffdiff
... Hello all, I have two BAM files obtained by HISAT2 and I want to see differential expression of some genes. Can I use Cuffdiff to see the differential expression? ...
rna-seq differential expression written 4 months ago by qudrat50
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Cufflinks and fpkm
... Hello guys, Can somebody suggest me how to choose cut off fpkm value for a list transcripts generated from Cufflinks. ...
gene rna-seq written 4 months ago by qudrat50 • updated 4 months ago by Kevin Blighe24k
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gtf file and rnaseq
... Hello all I was wondering to ask whether there are any method to find common transcripts between two gtf file? I have produced gtf files from StringTie and I am interested in to proceed forward with common transcripts. ...
alignment rna-seq written 4 months ago by qudrat50 • updated 4 months ago by Buffo1.1k
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Cufflinks and StringTie
... Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to see the common transcripts between these two software. ...
assembly rna-seq written 5 months ago by qudrat50 • updated 5 months ago by andrew.j.skelton735.1k

Latest awards to qudrat

Supporter 8 months ago, voted at least 25 times.
Rising Star 8 months ago, created 50 posts within first three months of joining.

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