User: preethibagopi5

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Posts by preethibagopi5

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Comment: C: SNAP error in MAKER exon:out_of_bounds
... Name of the scaffold is having the % symbol in it. Is that will be the problem.....? ...
written 11 months ago by preethibagopi50
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Comment: A: SNAP error in MAKER exon:out_of_bounds
... Yes I am using the same GFF file from same genome assembly file..... A part of my GFF file: Scaffold_94%3BHRSCAF%3D190 . contig 1 59085 . . . Scaffold_94%3BHRSCAF%3D190 maker exon 4576 4872 . - . Scaffold_94%3BHRSCAF%3D190 ...
written 11 months ago by preethibagopi50
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5 follow
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SNAP error in MAKER exon:out_of_bounds
... Hi, I am running a genome annotation in MAKER2 in which I completed the evidence round of maker and got a GFF3 file as output. I used the GFF3 file from the first maker run to train the SNAP in which it is showing me the error as this. MODEL20592 1 1 3 + errors(3): exon-1:out_of_bounds exon-2:o ...
genome annotation snap maker2 written 11 months ago by preethibagopi50 • updated 4 months ago by cheapshoppinggifts0
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Answer: A: How to map CpG ids to nearest genes?
... I try to install IlluminaHumanMethylation450k.db package for annotation but I came across this error. Error: package or namespace load failed for 'IlluminaHumanMethylation450k.db': .onLoad failed in loadNamespace() for 'IlluminaHumanMethylation450k.db', details: call: NULL erro ...
written 2.6 years ago by preethibagopi50 • updated 2.6 years ago by Devon Ryan95k
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How to map CpG ids to nearest genes?
... I am working in dna methylation data and I am having a .csv file containing cpg ids. I want to map the cpg sites to nearest gene. How to do that in R? Thanks in advance ...
genome R next-gen gene written 2.6 years ago by preethibagopi50
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R bioconductor in analysying methylation data
... I was working on methylation profiling data. I tried to find the gene ontology related to identified DMRs using gometh function. The command I gave is: gst <- gometh(sig.cpg=sigCpgs, all.cpg=allcpgs, collection = "GO",plot.bias = FALSE, prior.prob = TRUE) But I got the error like this. ...
R written 2.7 years ago by preethibagopi50 • updated 21 months ago by Xavier Pastor0

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Popular Question 2.6 years ago, created a question with more than 1,000 views. For How to map CpG ids to nearest genes?

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