User: preethibagopi5

Reputation:
0
Status:
New User
Last seen:
4 days, 12 hours ago
Joined:
1 year, 9 months ago
Email:
p*************@yahoo.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by preethibagopi5

<prev • 6 results • page 1 of 1 • next >
0
votes
0
answers
69
views
0
answers
Comment: C: SNAP error in MAKER exon:out_of_bounds
... Name of the scaffold is having the % symbol in it. Is that will be the problem.....? ...
written 5 days ago by preethibagopi50
0
votes
0
answers
69
views
0
answers
Comment: A: SNAP error in MAKER exon:out_of_bounds
... Yes I am using the same GFF file from same genome assembly file..... A part of my GFF file: Scaffold_94%3BHRSCAF%3D190 . contig 1 59085 . . . Scaffold_94%3BHRSCAF%3D190 maker exon 4576 4872 . - . Scaffold_94%3BHRSCAF%3D190 ...
written 5 days ago by preethibagopi50
0
votes
0
answers
69
views
0
answers
SNAP error in MAKER exon:out_of_bounds
... Hi, I am running a genome annotation in MAKER2 in which I completed the evidence round of maker and got a GFF3 file as output. I used the GFF3 file from the first maker run to train the SNAP in which it is showing me the error as this. MODEL20592 1 1 3 + errors(3): exon-1:out_of_bounds exon-2:o ...
genome annotation snap maker2 written 5 days ago by preethibagopi50
0
votes
3
answers
1.8k
views
3
answers
Answer: A: How to map CpG ids to nearest genes?
... I try to install IlluminaHumanMethylation450k.db package for annotation but I came across this error. Error: package or namespace load failed for 'IlluminaHumanMethylation450k.db': .onLoad failed in loadNamespace() for 'IlluminaHumanMethylation450k.db', details: call: NULL erro ...
written 20 months ago by preethibagopi50 • updated 20 months ago by Devon Ryan90k
1
vote
3
answers
1.8k
views
3
answers
How to map CpG ids to nearest genes?
... I am working in dna methylation data and I am having a .csv file containing cpg ids. I want to map the cpg sites to nearest gene. How to do that in R? Thanks in advance ...
genome R next-gen gene written 20 months ago by preethibagopi50
0
votes
1
answer
532
views
1
answer
R bioconductor in analysying methylation data
... I was working on methylation profiling data. I tried to find the gene ontology related to identified DMRs using gometh function. The command I gave is: gst <- gometh(sig.cpg=sigCpgs, all.cpg=allcpgs, collection = "GO",plot.bias = FALSE, prior.prob = TRUE) But I got the error like this. ...
R written 21 months ago by preethibagopi50 • updated 10 months ago by Xavier Pastor0

Latest awards to preethibagopi5

Popular Question 20 months ago, created a question with more than 1,000 views. For How to map CpG ids to nearest genes?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1807 users visited in the last hour