User: Lissa Cruz Saavedra

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Posts by Lissa Cruz Saavedra

<prev • 5 results • page 1 of 1 • next >
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Could I use a BAM file output to make a alignment with others FASTA references?
... I am wondering about to use a BAM file output as a input to make a alignment to others FASTA reference genome. I have been reading how to get a FASTA format from my BAM file but I am not sure if the reads depth could affect my alignment. If that is possible, How could I do that? ...
fasta bam written 4 months ago by Lissa Cruz Saavedra0 • updated 4 months ago by genomax85k
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Comment: C: minimap to make a comparison between reference to de novo assembly
... Thank you so so much!. I didn't know, your so kind! ...
written 10 months ago by Lissa Cruz Saavedra0
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Comment: A: Merge DEseq and Cufflinks outputs
... Hi, I am sorry to be late. You mean I coul take the reads from DEGs in my bam file from each on my statistic softwares? ...
written 10 months ago by Lissa Cruz Saavedra0
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minimap to make a comparison between reference to de novo assembly
... Hi I am trying to compare between my reference fasta file versus some de novo assembly (that includes just a sequences from family of proteins in fasta format after run blast). I am using the following commands: minimap2 -cx asm5 --cs /shared2/salmosim/lissa/fasta/TriTrypDB-41_TcruziSylvioX1 ...
minimap alignment written 10 months ago by Lissa Cruz Saavedra0 • updated 10 months ago by ATpoint36k
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Merge DEseq and Cufflinks outputs
... Hi everyone I am trying to get a very cofidence results from RNAseq data. I was reading about compare or merge between different diferential expression test outputs as DEseq and Cufflinks, but I am wondering about how could iI do it. because i will a lot ID genes from my DEGs. Thanks a lot! ...
cufflinks degs deseq rna-seq written 11 months ago by Lissa Cruz Saavedra0

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