User: crouch.k

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crouch.k0
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Posts by crouch.k

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Comment: C: Get FPKM across replicates without doing a differential expression
... Hi Thanks for the reply. Yes, I am aware of the pitfalls of FPKM and have used DESeq2 for differential expression for a long time. In this case, I am working with a non-model organism that has a very unusual genome architecture. Specifically, genes are transcribed in large polycistronic units t ...
written 7 weeks ago by crouch.k0
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Get FPKM across replicates without doing a differential expression
... Hi, I am trying to perform a within-sample analysis of expression data using FPKM - essentially I want to be able to rank my genes. I am not doing differential expression. I have 3 biological replicates of my sample. What I would like to be able to do is generate an FPKM for each gene that is re ...
fpkm dna-seq rna-seq written 7 weeks ago by crouch.k0 • updated 7 weeks ago by Kevin Blighe6.7k

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