User: Sam

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Sam20
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Posts by Sam

<prev • 62 results • page 1 of 7 • next >
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problem with bowtie alignment
... I have a problem with bowtie alignment, I used bowtie to find match sequence in fastq file with rfam sequence list. I tested it in 2 different conditions: with and without miRNAs sequence in rfam list. But there is a big difference between result in these 2 different condition. When I used complete ...
smallrna bowtie written 7 days ago by Sam20
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Comment: C: fastq file data
... I think to a awk code to have a sequence length frequency in each fq file and then merge them in Excel to have a unique sequence length graph with different color for each lib. ...
written 9 days ago by Sam20
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Comment: C: fastq file data
... it's works without any problem with -i file1.text , and I have a nice plot in out put , problem is fastx_nucleotide_distribution_graph.sh is not compatible with more than one input file. so I should find other alternative scripts for merge nucleotide_distribution_graph from distinct fq file. ...
written 9 days ago by Sam20
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Comment: C: fastq file data
... no all thing is OK with FASTQC , I can post only 5 post per 6hr, is there any way to improve it ? ...
written 9 days ago by Sam20
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Comment: C: fastq file data
... but I explained all story, fastx_nucleotide_distribution_graph.sh just take TXT out put file of fastx_quality_stats as input, with one txt input file fastx_nucleotide_distribution_graph.sh works well but with two input file( -i file1.txt file2.txt) I got this error: gnuplot> set term png si ...
written 9 days ago by Sam20
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Comment: C: fastq file data
... above commands not work , except hurts and harm topic fast reply! could you help to find a way ? ...
written 9 days ago by Sam20
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Comment: C: fastq file data
... should use output of fastx_quality_stats , as input for FASTA/Q Nucleotide Distribution , so is it a right command ? fastx_nucleotide_distribution_graph.sh -i file1.TXT file2.TXT file3.TXT [-t TITLE] [-o OUTPUT] ...
written 9 days ago by Sam20
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Comment: C: fastq file data
... I don't want merge all reads , just want show sequence length of multi fq file , separately (for instance according color ) in one graph ...
written 9 days ago by Sam20
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Comment: C: fastq file data
... fastx-tool kit but it just for one lib and I want merge all lib data in one geraph ...
written 9 days ago by Sam20
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fastq file data
... Hello how I can show nucleotide distribution and sequence length of multi fastq file (1.fq, 2.fq,...,6.fq) in just 2 separate graph? Thanks ...
fastq rna-seq written 9 days ago by Sam20 • updated 9 days ago by Istvan Albert ♦♦ 74k

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Rising Star 18 days ago, created 50 posts within first three months of joining.

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