User: Hussain Ather

gravatar for Hussain Ather
Hussain Ather700
Reputation:
700
Status:
Trusted
Location:
National Institutes of Health, Bethesda, MD
Website:
http://hussainather.com/
Twitter:
shussainather
Last seen:
3 days, 1 hour ago
Joined:
4 months, 2 weeks ago
Email:
s************@gmail.com

Post-baccalaureate researcher interested in algorithm design and genomics. 

Comments represent my own, not necessarily my employer's.

Posts by Hussain Ather

<prev • 126 results • page 1 of 13 • next >
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Answer: A: Packages/modules for CNV, Indels, SNPs analysis
... AnnTools https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3289923/ ...
written 18 days ago by Hussain Ather700
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Answer: A: opensource grafical user interface for filtering millions of annotated variant
... VCF Miner https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4793895/ ...
written 19 days ago by Hussain Ather700
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Comment: C: need data sets
... NIH has their list of repos here https://www.nlm.nih.gov/NIHbmic/nih_data_sharing_repositories.html ...
written 19 days ago by Hussain Ather700
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Answer: A: Extracting Indels from two aligned DNA sequences
... SeqFIRE does what you want https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394284/ Otherwise you could use `samtools view` to view them. samtools view -h in.bam \ | awk '$1 ~ "^@" || $6 ~ "I|D"' \ | samtools view -b - > out.bam ...
written 19 days ago by Hussain Ather700
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Answer: A: The Most Appropriate Statistical Test
... ANOVA should be fine for testing contrasts between conditions. ...
written 19 days ago by Hussain Ather700
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Answer: A: Assessing mapping quality from BAM files
... Check the quality control instructions here http://jvanheld.github.io/cisreg_course/chip-seq/practical/chip-seq.html ...
written 4 weeks ago by Hussain Ather700
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Answer: A: Machine Learning/Deep Learning approaches to integrate genotype and annotation i
... Guzzetta et al https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-S8-S3 ...
written 5 weeks ago by Hussain Ather700
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Answer: A: Liftover of .vcf files from build 37 to build 38
... Have you tried upgrading picard? ...
written 5 weeks ago by Hussain Ather700
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Answer: A: Is there a database of proteins and their functional residues?
... CATH has a lot of protein information http://www.cathdb.info/ ...
written 5 weeks ago by Hussain Ather700
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Answer: A: Annotation of taxonomy information in phylogeny tree
... Try EvolView http://www.evolgenius.info/evolview/ ...
written 5 weeks ago by Hussain Ather700

Latest awards to Hussain Ather

Scholar 6 weeks ago, created an answer that has been accepted. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Centurion 8 weeks ago, created 100 posts.
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Scholar 10 weeks ago, created an answer that has been accepted. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Appreciated 10 weeks ago, created a post with more than 5 votes. For Google announces DeepVariant
Scholar 11 weeks ago, created an answer that has been accepted. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Rising Star 11 weeks ago, created 50 posts within first three months of joining.
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Scholar 11 weeks ago, created an answer that has been accepted. For A: When performing Fisher's exact test, should I consider all annotated or all dete
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Supporter 3 months ago, voted at least 25 times.

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