User: Hussain Ather

gravatar for Hussain Ather
Hussain Ather440
Reputation:
440
Status:
Trusted
Location:
National Institutes of Health, Bethesda, MD
Website:
http://hussainather.com/
Twitter:
shussainather
Last seen:
6 minutes ago
Joined:
2 months, 1 week ago
Email:
s************@gmail.com

Post-baccalaureate researcher interested in algorithm design and genomics. 

Comments represent my own, not necessarily my employer's.

Posts by Hussain Ather

<prev • 76 results • page 1 of 8 • next >
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Comment: C: Multiple looping in python
... You need to make sure that the list `matches` is only created once. Create it outside of the function. pos = [125, 130, 142] cigar = [[(0, 150), (3, 50), (0, 130), (3, 270), (0, 750)], [(0, 250), (3, 250), (0, 160), (3, 270), (0, 750)], [(0, 150), (3, 150), (0, 130), (3, 250), (0, 950) ...
written 44 minutes ago by Hussain Ather440
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Comment: C: Multiple looping in python
... Figure out what two things you want to connect with the `+` operator and figure out the way to call them properly. If you are calling two integers that you want summed, you need the appropriate way to call them. Right now, you are calling an integer and a tuple. To get the integer from a tuple, use ...
written 1 hour ago by Hussain Ather440
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Comment: C: Multiple looping in python
... You need a new indentation for each for loop. If you want to iterate over each value from cigar and pos, you need something like: for i in cigar: for j,k in i: for l in pos: ...
written 1 hour ago by Hussain Ather440
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Answer: A: Multiple looping in python
... How do you want to multiloop it? What have you tried? ...
written 2 hours ago by Hussain Ather440
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Answer: A: error bar in boxplot ggplot2
... Check out geom_errorbar http://www.cookbook-r.com/Graphs/Plotting_means_and_error_bars_(ggplot2)/ ...
written 4 hours ago by Hussain Ather440
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Answer: A: exclude gene with features from gff3 file
... Python. This works if you have no empty lines in file1. f1 = open("Arabidopsis_thaliana.TAIR10.37.gff3", "r") f2 = open("file1", "r") o = open("excluded.txt", "w") genes = [] for line in f2.readlines(): genes.append(line.replace("\n", "")) def gene_check(line, genes): ...
written 1 day ago by Hussain Ather440
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Answer: A: If the Scalpel can be installed on MacBook Pro?
... Yes it can be installed. Here are instructions http://www.noktec.be/pentesting-with-os-x/scalpel-on-osx ...
written 1 day ago by Hussain Ather440
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Answer: A: bedtools intersect segmentation fault
... Which version of bedrolls are you running? There were some reports of segmentation faults with -wao with version 2.25 and updating to 2.26 might help. ...
written 2 days ago by Hussain Ather440
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Comment: C: Bedtools intersect returns 0, intersections present on IGV
... It looks like the dollar sign at the end of each line might be causing trouble. You can use this command to remove the last character from each line: sed 's/.$//' gene.ROI > geneROI.nolast ...
written 2 days ago by Hussain Ather440
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Answer: A: BAM file comparison
... You could try using [bamcoverage][1] from deeptools to convert them to bigwig files and then visualizing them using [IGV][2] or [UCSC Genome Browser][3]. [1]: http://deeptools.readthedocs.io/en/latest/content/tools/bamCoverage.html [2]: http://software.broadinstitute.org/software/igv/ [3]: ...
written 2 days ago by Hussain Ather440

Latest awards to Hussain Ather

Appreciated 5 days ago, created a post with more than 5 votes. For Google announces DeepVariant
Teacher 6 days ago, created an answer with at least 3 up-votes. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Rising Star 9 days ago, created 50 posts within first three months of joining.
Teacher 9 days ago, created an answer with at least 3 up-votes. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Scholar 10 days ago, created an answer that has been accepted. For A: When performing Fisher's exact test, should I consider all annotated or all dete
Autobiographer 13 days ago, has more than 80 characters in the information field of the user's profile.
Supporter 20 days ago, voted at least 25 times.

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