User: nasreenbano91

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Posts by nasreenbano91

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Comment: C: align_and_estimate_abundance.pl (rsem-parse-alignments: /lib64/libz.so.1: versio
... [sudo] password for nbri: when i am giving password then below statements are coming- nbri is not in the sudoers file. This incident will be reported. ...
written 4 weeks ago by nasreenbano910
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Comment: C: align_and_estimate_abundance.pl (rsem-parse-alignments: /lib64/libz.so.1: versio
... i have tried but sudo command does not run in this linux system. is there another command to install zlib-devel? ...
written 4 weeks ago by nasreenbano910
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Comment: C: align_and_estimate_abundance.pl (rsem-parse-alignments: /lib64/libz.so.1: versio
... i am using- x86_64 x86_64 x86_64 GNU/Linux CentOS release 6.5 (Final) ...
written 4 weeks ago by nasreenbano910
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align_and_estimate_abundance.pl (rsem-parse-alignments: /lib64/libz.so.1: version `ZLIB_1.2.3.3' not found (required by rsem-parse-alignments))
... Hi I am trying to estimate transcript abundance from a transcriptome generated from paired-end RNA-seq data using Trinity (using `trinityrnaseq-2.2.0`). Trinity.fasta (head) >TRINITY_DN143007_c0_g1_i1 len=314 path=[632:0-108 633:109-132 634:133-313] [-1, 632, 633, 634, -2] TTGGGACTTTTT ...
software error sequence next-gen alignment rna-seq written 4 weeks ago by nasreenbano910 • updated 4 weeks ago by Alex Reynolds24k
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Comment: C: Trinity transcript_abundance.pl error using RSEM (65280 at line 766)
... Thanks for your reply h.mon ...
written 5 weeks ago by nasreenbano910
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align_and_estimate_abundance.pl (Error: reads file does not look like a FASTA file )
... Hi I am trying to estimate transcript abundance from a transcriptome generated from paired-end RNA-seq data using Trinity. However, I am running into a consistent error while using the- The error is as follows: CMD: set -o pipefail && bowtie -f --all --best --strata -m 300 --chunkmbs 512 - ...
next-gen alignment rna-seq sequencing written 5 weeks ago by nasreenbano910
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Trinity transcript_abundance.pl error using RSEM (65280 at line 766)
... Hi I am trying to estimate transcript abundance from a transcriptome generated from paired-end RNA-seq data using Trinity. However, I am running into a consistent error while using the- perl align_and_estimate_abundance.pl --seqType fastq --left /home/nbri/nasreen/qf_leaf_1.fastq --right /hom ...
assembly next-gen rna-seq sequencing written 5 weeks ago by nasreenbano910 • updated 5 weeks ago by h.mon15k
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Answer: A: align_and_estimate_abundance after assembly in Trinity
... The output file of quality filter was not equal that's why this problem was happening. After making R1 and R2 reads equal through merging and splitting script this problem can be easily resolved. ...
written 7 months ago by nasreenbano910
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Answer: A: align_and_estimate_abundance after assembly in Trinity
... find the solution. ...
written 8 months ago by nasreenbano910
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align_and_estimate_abundance after assembly in Trinity
... i have transcriptome data (R1 and R2 of Cestrum diurnum & R1 AND R2 of Cestrum nocternum). I have to perform de novo assembly through Trinity to find out the gene differences in between these 2 species. i did quality filter, assembly and align_and_estimate_abundance through trinity. till assem ...
assembly alignment rna-seq trinity written 8 months ago by nasreenbano910

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