User: evcon

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evcon0
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Posts by evcon

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How to use 0 and 1 coordinates in pyfaidx
... Im using pyfaidx to get genomic sequences, but I'm a little confused on the 0 vs 1 based coordinates. From the docs "Note that start and end coordinates of Sequence objects are [1, 0]. This can be changed to [0, 0] by passing one_based_attributes=False to Fasta or Faidx" So does that mean if I want ...
pyfaidx python written 10 weeks ago by evcon0 • updated 10 weeks ago by finswimmer6.2k
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Comment: C: genome sequence look up tool
... Thanks! This is perfect! Knew this had to exist already. ...
written 3 months ago by evcon0
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genome sequence look up tool
... Is there a tool to look up genomic sequences? Something in python would be most helpful. For example something like this: >>>getseq('chr1'.'100500','100505') AACTGC ...
genome sequence written 3 months ago by evcon0 • updated 3 months ago by h.mon20k

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