User: lefthandgergo

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Posts by lefthandgergo

<prev • 7 results • page 1 of 1 • next >
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Database about antigens, used in tumor vaccination?
... Hi! I'm looking for a database (or any publications with bigger datasets), that contains neoantigens, that have been tried in cancer vaccination trials, along with vaccination efficacy of given antigens. Do you know such a db anywhere online? Thanks! ...
cancer vaccination tumor database written 7 weeks ago by lefthandgergo10
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Comment: C: Any database of parasitic worm species?
... Thank you very much! I did not specify in my question, but I'm looking for a db with human parasites, but this website seems good as well! ...
written 3 months ago by lefthandgergo10
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Any database of parasitic worm species?
... Hi! Does anyone know any database, which collects a list of parasitic worm species? I've only found some dbs which describe diseases, caused by these organisms, and could not find a referenceable, well-organized list of them anywhere. Thanks! ...
worms helminths database written 4 months ago by lefthandgergo10 • updated 4 months ago by Pierre Lindenbaum124k
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Comment: C: TCGA RNA-Seq: are RSEM or Z-scores based expression comparable to each other?
... Actually what I plan is to collect all expression values for each group, and then look for significant differences between them using Wilcoxon test. ...
written 8 months ago by lefthandgergo10
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TCGA RNA-Seq: are RSEM or Z-scores based expression comparable to each other?
... Hi! I'd like to compare expression levels of given genes between two subgroups of the TCGA cohort. I have expression data, derived from the PanCancer Atlas, from cbioportal in two different files: "data_RNA_Seq_v2_expression_median.txt" (RSEM) and "data_RNA_Seq_v2_mRNA_median_Zscores.txt". Which cou ...
tcga rna-seq written 8 months ago by lefthandgergo10
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Differences between parSeqSim and twoSeqSim results
... Hi! I am trying to compare 100 peptide sequences to each other using the default settings of twoSeqSim and parSeqSim from the protr package (local alignment and BLOSUM62 substitution matrix). However, the results are different using the two functions. Using my CompareAll function, which executes tw ...
R sequence similarity protr written 15 months ago by lefthandgergo10 • updated 15 months ago by h.mon28k
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GRCh37 -> GRCh38 alternative loci index conversion
... Hi there! I'd like to find alternative loci sections (eg. chr6_cox_hap2) of the GRCh37 human reference genome in GRCh38. I've already found some tools to perform position conversions between the two assemblies (LiftOver and NCBI Remap), but not for these alternative sequence names. Do you have any ...
assembly bam reference genome written 20 months ago by lefthandgergo10

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