User: c.clarido

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c.clarido40
Reputation:
40
Status:
New User
Location:
Netherlands/Rotterdam/Leiden University (Applied Science)
Last seen:
1 week, 6 days ago
Joined:
1 year, 4 months ago
Email:
c*************@gmail.com

Posts by c.clarido

<prev • 33 results • page 1 of 4 • next >
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Comment: C: how to install survivor with conda
... I get this: $ conda search survivor Loading channels: done PackagesNotFoundError: The following packages are not available from current channels: - survivor Current channels: - https://conda.anaconda.org/bioconda/osx-64 - https://conda.anaconda. ...
written 17 days ago by c.clarido40
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how to install survivor with conda
... Hello community, I'm kinda new with installing packages in conda. So I am trying to install the [survivor][1] and I tried both: 1. conda install -c bioconda survivor 2. conda install -c bioconda/label/cf201901 survivor I get: PackagesNotFoundError: The following packages are not available from ...
channel survivor conda instal written 17 days ago by c.clarido40 • updated 17 days ago by Devon Ryan88k
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Comment: C: How to add help function in a snakemake file
... Thank you, I added a rule where I "cat" the help description from a file and it works fine. ...
written 3 months ago by c.clarido40
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How to add help function in a snakemake file
... Hello community, How do you add help function in a snakemake file such that it will print a description of the workflow when you enter: snakemake --snakefile Snakefile help I tried the following: import argparse parser = argparse.ArgumentParser( description='''ENTER DESCRIPTION H ...
snakefile snakemake helpfunction written 4 months ago by c.clarido40 • updated 3 months ago by dariober9.9k
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Comment: C: Error: Snakemake skiped a rule
... Thank you rizoic, I will definitely try this, In the meantime I used the priority method and it seems to be working ( still processing ). ...
written 4 months ago by c.clarido40
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Comment: C: Error: Snakemake skiped a rule
... In addition I found the following the information from snakemake documentation: Snakemake allows rules to specify numeric priorities: rule: input: ... output: ... priority: 50 shell: ... Per default, each rule has a priority of 0. Any rule that specifies a higher pr ...
written 4 months ago by c.clarido40
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Comment: C: Error: Snakemake skiped a rule
... Thank you for your reply. That may indeed be the case, how can I prevent this from happening? ...
written 4 months ago by c.clarido40
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Error: Snakemake skiped a rule
... Hello community, I made a pipeline using snakemake to count SNPs and INDELs. There were no problems when I run the pipeline with smaller data, which is the fragment of the original data. However, when I start running the pipeline using the original data, for some reason a rule has been skipped whi ...
snakefile snps pipeline snakemake indels written 4 months ago by c.clarido40 • updated 4 months ago by rizoic190
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Comment: C: Installing samtools from sourceforge
... Yeah It's working! thank you! I went to the folder and typed ./samtools and showed the options ...
written 4 months ago by c.clarido40
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Comment: C: Installing samtools from sourceforge
... yeah I believe I saw some errors, if I rerun it it will just say there is nothing to be done ...
written 4 months ago by c.clarido40

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