User: tim.ivanov.92

gravatar for tim.ivanov.92
Reputation:
10
Status:
New User
Location:
Last seen:
1 week, 6 days ago
Joined:
1 year, 8 months ago
Email:
t************@gmail.com

Posts by tim.ivanov.92

<prev • 62 results • page 1 of 7 • next >
0
votes
1
answer
100
views
1
answers
Comment: C: Exonerate raw score to percent identity
... Thank you, that helps - i forgot about ryo option because i was using biopython's wrapper to parse the output. Since we are here - do you know if i am able to access ryo format options from biopython? ...
written 4 weeks ago by tim.ivanov.9210
2
votes
1
answer
100
views
1
answer
Exonerate raw score to percent identity
... Does anyone know what exactly does line “raw score” in [exonerate][1] output mean? For example I attach here a screenshot of a full hit, where the length of a query is 74bp, yet the raw score is 370, which is much greater than 74. The original command was: exonerate --verbose 0 -E --model affine:b ...
smithwaterman exonerate alignment written 4 weeks ago by tim.ivanov.9210 • updated 4 weeks ago by Carambakaracho1.2k
0
votes
2
answers
121
views
2
answers
Comment: C: Protein coding annotation from UCSC
... Thank you, that does it! ...
written 5 weeks ago by tim.ivanov.9210
0
votes
2
answers
121
views
2
answers
Comment: C: Protein coding annotation from UCSC
... yes, sry, fixed it in the original post - now the second picture is the right one ...
written 5 weeks ago by tim.ivanov.9210
2
votes
2
answers
121
views
2
answers
Protein coding annotation from UCSC
... How do i download **only protein-coding** genes from UCSC table browser? I've chosen gencode v19 and genes and gene prediction in settings bars, but i'm getting in the result much more genes, than just protein coding I'm attaching here screenshots with my settings and the head of resulting data ...
annotation ucsc written 5 weeks ago by tim.ivanov.9210 • updated 5 weeks ago by Luis Nassar110
0
votes
1
answer
190
views
1
answers
Comment: C: Annotating multiple sequence alignment
... ok, thank you anyway! ...
written 4 months ago by tim.ivanov.9210
0
votes
1
answer
190
views
1
answers
Comment: C: Annotating multiple sequence alignment
... Thank you, this is helpful! Would you mind giving me an example of usage please? ...
written 4 months ago by tim.ivanov.9210
1
vote
1
answer
190
views
1
answer
Annotating multiple sequence alignment
... Does anyone know know how to use [TEXshade][1] package? Specifically, i want to just highlight some specific regions inside my alignment (exons) [1]: http://ctan.math.utah.edu/ctan/tex-archive/macros/latex/contrib/texshade/texshade.pdf ...
maf texshade alignment written 4 months ago by tim.ivanov.9210 • updated 4 months ago by Asaf5.9k
0
votes
1
answer
447
views
1
answers
Comment: C: Convert MAF to FASTA
... Thank you for the second link - i'll look into it Do you mb know how to get complete UCSC fasta records by **droSec1.super_9**? I think i will need it anyway later ...
written 6 months ago by tim.ivanov.9210
0
votes
1
answer
447
views
1
answers
Comment: C: Convert MAF to FASTA
... Does it considerer blocks inside an alignment? cos thats the whole problem - different blocks may include different organisms ...
written 6 months ago by tim.ivanov.9210

Latest awards to tim.ivanov.92

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 957 users visited in the last hour