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User: Mozart

gravatar for Mozart
Mozart • 250
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Posts by Mozart

<prev • 138 results • page 1 of 14 • next >
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Comment: C: Annotating two columns at the same time
... Thanks a lot – this clears things up. ...
written 26 days ago by Mozart • 250
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Comment: A: Annotating two columns at the same time
... Thanks for the comments. I have a list of ids interacting somehow with another list of ids. I want to convert these two lists into gene names. ...
written 27 days ago by Mozart • 250
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Comment: C: Annotating two columns at the same time
... apologies for not making this clear. I have peptide ids and want to convert these into protein names. ...
written 4 weeks ago by Mozart • 250
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Annotating two columns at the same time
... Hello everyone. I have two columns containing ensemble peptide ids. I was wondering whether it would be possible to annotate, with just one command line, two columns at the same time. the reason I ask for this is because the only idea I have in mind is to run 2 merge function one right after the o ...
R rna-seq written 4 weeks ago by Mozart • 250
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Comment: C: Network analysis: where to start?
... I am more generally interested by determining how to mathematically calculate correlation between genes and how, from there, create a basic network structure. ...
written 4 months ago by Mozart • 250
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Comment: C: Network analysis: where to start?
... Thanks for that. Really helpful. Can you also provide hints on the above comments provided here, please? ...
written 4 months ago by Mozart • 250
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Network analysis: where to start?
... Hello there, I am really fascinated by the possibility to start developing a very simple tool for analysing networks, given a list of genes. firstly, I would like to stress that the aim is not to publish but just understand the basics needed to get into grip with this tool. Before posting, I have r ...
network analysis rna-seq written 4 months ago by Mozart • 250 • updated 4 months ago by Bogdan • 1.1k
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Comment: C: PCA plots and biological information taken from other principal components
... Sorry for resurrecting this old post. I am always referring to this dataset where it seems that a nice clustering between groups is mainly achieved when PC5 is plotted against PC6. This is really a curiosity-driven question but would it be possible somehow to *extract and determine* which genes are ...
written 4 months ago by Mozart • 250
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Convergence of betas, iterations arguments with nbinomialWaldTest
... Hi, I am not going to ask how to solve issue related to the maxit argument with nbinomialWladTest within DESeq2 but for me, far from this scientific field, it's really hard to go through the vignette, other posts and lessons and trying to end up with a clear explanation of what is the convergence of ...
rna-seq written 4 months ago by Mozart • 250
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Comment: C: List of uniquely expressed genes
... Thank Kevin for your reply. Very helpful. My big concern here would be not only to define a parameter that define unique expression but also how to discriminate between different groups, if you get me. For example, what if a sub-group gets a z-score of 10, other two 5, and one 2? How can you set a c ...
written 6 months ago by Mozart • 250

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Popular Question 10 weeks ago, created a question with more than 1,000 views. For Advice for the following PCA analysis
Popular Question 6 months ago, created a question with more than 1,000 views. For biomaRt correct annotation but...
Popular Question 7 months ago, created a question with more than 1,000 views. For biomaRt correct annotation but...
Popular Question 9 months ago, created a question with more than 1,000 views. For Kallisto-Sleuth or Kallisto-Deseq2?
Centurion 9 months ago, created 100 posts.
Student 10 months ago, asked a question with at least 3 up-votes. For PCA in a RNA seq analysis
Popular Question 11 months ago, created a question with more than 1,000 views. For Kallisto-Sleuth or Kallisto-Deseq2?
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Epic Question 18 months ago, created a question with more than 10,000 views. For PCA in a RNA seq analysis
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Good Question 24 months ago, asked a question that was upvoted at least 5 times. For PCA in a RNA seq analysis
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