User: Mozart
Mozart • 240
- Reputation:
- 240
- Status:
- Trusted
- Location:
- Last seen:
- 16 hours ago
- Joined:
- 2 years, 12 months ago
- Email:
- m******************@gmail.com
Posts by Mozart
<prev
• 132 results •
page 1 of 14 •
next >
1
vote
1
answer
50
views
5 follow
1
answer
... Hello there,
I am really fascinated by the possibility to start developing a very simple tool for analysing networks, given a list of genes. firstly, I would like to stress that the aim is not to publish but just understand the basics needed to get into grip with this tool.
Before posting, I have r ...
0
votes
1
answer
210
views
1
answers
... Sorry for resurrecting this old post. I am always referring to this dataset where it seems that a nice clustering between groups is mainly achieved when PC5 is plotted against PC6. This is really a curiosity-driven question but would it be possible somehow to *extract and determine* which genes are ...
written 16 days ago by
Mozart • 240
0
votes
0
answers
94
views
0
answers
... Hi,
I am not going to ask how to solve issue related to the maxit argument with nbinomialWladTest within DESeq2 but for me, far from this scientific field, it's really hard to go through the vignette, other posts and lessons and trying to end up with a clear explanation of what is the convergence of ...
written 19 days ago by
Mozart • 240
0
votes
1
answer
174
views
1
answers
Comment:
C: List of uniquely expressed genes
... Thank Kevin for your reply. Very helpful.
My big concern here would be not only to define a parameter that define unique expression but also how to discriminate between different groups, if you get me. For example, what if a sub-group gets a z-score of 10, other two 5, and one 2?
How can you set a c ...
written 9 weeks ago by
Mozart • 240
0
votes
1
answer
174
views
1
answers
Comment:
C: List of uniquely expressed genes
... Thanks a lot Kevin for this. Can I ask you if could explain why z score have to be bigger than 1.96 and what's its relationship with the mean value, please? To be fair I don't have an idea the rationale behind using z-scores? I presume we can use it because it returns standardised measurements?
than ...
written 10 weeks ago by
Mozart • 240
0
votes
1
answer
174
views
1
answers
Comment:
C: List of uniquely expressed genes
... Thanks for your comment. They are trying to determine uniquely expressed genes that are taken from of a certain dataset. They want me to create a set per group containing gene that characterise the latter. Do you have any idea how to deal with this? Apparently, as far as I am aware a relative compar ...
written 10 weeks ago by
Mozart • 240
0
votes
1
answer
174
views
1
answer
... Dear all,
I am wrapping my head around a way to define uniquely expressed genes regardless of any differential expression analysis approaches. Essentially, it has been asked to find some sort of 'method' that allowed me to define a certain gene as uniquely expressed in the dataset in such way that I ...
written 10 weeks ago by
Mozart • 240
1
vote
0
answers
205
views
0
answers
... Hello there,
1. I was reading this [post][1] and wondering what could be the best
tool to perform meta-analysis for RNA-seq experiment. Is DESeq2 a
good tool for that? I have heard about metaSeq and it seems to be
good. Any experience with the latter, by any chance?
2. anothe ...
0
votes
1
answer
403
views
1
answers
... thanks a lot for that! ...
written 3 months ago by
Mozart • 240
0
votes
1
answer
403
views
1
answers
... Kevin, sorry for resurrecting this old post. Not sure I have got this right.
In the default settings, the parameter `pCutoff` stands for nominal p value, right? what if one wants to use p adjusted ones, instead?
Sorry for my naive question but, why in a volcano plot nominal p values are preferred o ...
written 3 months ago by
Mozart • 240
Latest awards to Mozart
Popular Question
12 weeks ago,
created a question with more than 1,000 views.
For biomaRt correct annotation but...
Popular Question
3 months ago,
created a question with more than 1,000 views.
For biomaRt correct annotation but...
Popular Question
5 months ago,
created a question with more than 1,000 views.
For Kallisto-Sleuth or Kallisto-Deseq2?
Centurion
5 months ago,
created 100 posts.
Popular Question
6 months ago,
created a question with more than 1,000 views.
For Kallisto-Sleuth or Kallisto-Deseq2?
Popular Question
9 months ago,
created a question with more than 1,000 views.
For Kallisto-Sleuth or Kallisto-Deseq2?
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Kallisto-Sleuth or Kallisto-Deseq2?
Voter
14 months ago,
voted more than 100 times.
Epic Question
14 months ago,
created a question with more than 10,000 views.
For PCA in a RNA seq analysis
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Kallisto-Sleuth or Kallisto-Deseq2?
Good Question
20 months ago,
asked a question that was upvoted at least 5 times.
For PCA in a RNA seq analysis
Great Question
23 months ago,
created a question with more than 5,000 views.
For PCA in a RNA seq analysis
Popular Question
2.0 years ago,
created a question with more than 1,000 views.
For Kallisto or Deseq2?
Popular Question
2.3 years ago,
created a question with more than 1,000 views.
For Kallisto or Deseq2?
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For PCA in a RNA seq analysis
Supporter
3.0 years ago,
voted at least 25 times.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 948 users visited in the last hour