User: Mozart
Mozart • 250
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Posts by Mozart
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... Thanks a lot – this clears things up. ...
written 26 days ago by
Mozart • 250
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... Thanks for the comments. I have a list of ids interacting somehow with another list of ids. I want to convert these two lists into gene names. ...
written 27 days ago by
Mozart • 250
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... apologies for not making this clear.
I have peptide ids and want to convert these into protein names. ...
written 4 weeks ago by
Mozart • 250
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7 follow
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... Hello everyone.
I have two columns containing ensemble peptide ids. I was wondering whether it would be possible to annotate, with just one command line, two columns at the same time.
the reason I ask for this is because the only idea I have in mind is to run 2 merge function one right after the o ...
written 4 weeks ago by
Mozart • 250
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Comment:
C: Network analysis: where to start?
... I am more generally interested by determining how to mathematically calculate correlation between genes and how, from there, create a basic network structure. ...
written 4 months ago by
Mozart • 250
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Comment:
C: Network analysis: where to start?
... Thanks for that. Really helpful. Can you also provide hints on the above comments provided here, please? ...
written 4 months ago by
Mozart • 250
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... Hello there,
I am really fascinated by the possibility to start developing a very simple tool for analysing networks, given a list of genes. firstly, I would like to stress that the aim is not to publish but just understand the basics needed to get into grip with this tool.
Before posting, I have r ...
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... Sorry for resurrecting this old post. I am always referring to this dataset where it seems that a nice clustering between groups is mainly achieved when PC5 is plotted against PC6. This is really a curiosity-driven question but would it be possible somehow to *extract and determine* which genes are ...
written 4 months ago by
Mozart • 250
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... Hi,
I am not going to ask how to solve issue related to the maxit argument with nbinomialWladTest within DESeq2 but for me, far from this scientific field, it's really hard to go through the vignette, other posts and lessons and trying to end up with a clear explanation of what is the convergence of ...
written 4 months ago by
Mozart • 250
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Comment:
C: List of uniquely expressed genes
... Thank Kevin for your reply. Very helpful.
My big concern here would be not only to define a parameter that define unique expression but also how to discriminate between different groups, if you get me. For example, what if a sub-group gets a z-score of 10, other two 5, and one 2?
How can you set a c ...
written 6 months ago by
Mozart • 250
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