User: Mozart

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Mozart190
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Posts by Mozart

<prev • 110 results • page 1 of 11 • next >
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Conservative (unadjusted) p value histograms
... Hello everyone, I am working on a case study where distribution of p values, unfortunately, conservative rather than being anti-conservative. It's good to face difficulties as they *forge your patience* but I guess this is where it comes the hard bit. Based on [this post][1] and [this other post][ ...
rna-seq written 7 hours ago by Mozart190
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Comment: C: Plotting PCA plot in DESeq2 on SVA corrected counts
... Thanks for the useful hints ATpoint and yeah, I totally agree about the usefulness of this platform! In the light of this, one more question if you don't mind. I noticed that once the matrix is corrected by using the `cleaningP` function: cleaningP = function(y, mod, svaobj, P=ncol(mod)) { ...
written 1 day ago by Mozart190
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Comment: C: Plotting PCA plot in DESeq2 on SVA corrected counts
... Thanks ATpoint, that basically solved my problem. It really sounds so reassuring how important this forum could be in the learning process. It's good to have a good string of code to use for all the pipelines, to be honest. Thanks a million. ...
written 1 day ago by Mozart190
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Plotting PCA plot in DESeq2 on SVA corrected counts
... Hello everyone, I am trying to understand how to show a PCA plot on SVA-corrected counts by using DESeq2 (I know that expert guys tend to prefer some other tools but I need this for a presentation). Many posts out there (like [this][1], [this][2] and [this][3]) but none of them seem to address exact ...
sva deseq2 pca written 2 days ago by Mozart190
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Comment: C: Heatmap with just two columns
... Thanks a lot!! I will do! ...
written 12 days ago by Mozart190
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Comment: C: Heatmap with just two columns
... Thanks so much for your reply. Sometimes it is hard to change someone else's mind, if you know what I mean! It's all about being persuasive and kind at the same time but it's just hard sometimes. But thanks a lot, I do appreciate the fact that the common way of doing this is actually the usual appro ...
written 12 days ago by Mozart190
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Heatmap with just two columns
... Hello everyone, I have been asked to summarise information from my count matrix - obtained from 4 replicates - in just two columns (one column per group). What's the best approach to do this? I usually use the following steps to get a classical heatmap containing as many tiles as per replicate ...
rna-seq heatmap written 12 days ago by Mozart190
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Comment: C: GSEA and IPA: alternative or complementary?
... Thanks a lot for this clarification. I will try to look at the Omicsoft deeper if I can. But what if one has to draw conclusions for like 'defending' the idea according to which both tools are used (I mean, IPA and GSEA)? ...
written 23 days ago by Mozart190
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GSEA and IPA: alternative or complementary?
... Dear all, I have read a couple of papers where people used both GSEA and IPA for their analysis in their pipeline and tried to justify this approach by saying that they tried to confirm results found in IPA with GSEA too. What do you think? Does it make any sense to you? regards, ...
pathway analysis rna-seq written 24 days ago by Mozart190 • updated 24 days ago by igor10k
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Comment: C: PCA plots and biological information taken from other principal components
... Thanks a lot Kevin for these useful information. I think it would be really important to be in touch with the sequencing facility in order to understand what is going on with my samples. fingers crossed! ...
written 26 days ago by Mozart190

Latest awards to Mozart

Popular Question 10 days ago, created a question with more than 1,000 views. For Kallisto-Sleuth or Kallisto-Deseq2?
Centurion 26 days ago, created 100 posts.
Student 5 weeks ago, asked a question with at least 3 up-votes. For PCA in a RNA seq analysis
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Kallisto-Sleuth or Kallisto-Deseq2?
Popular Question 4 months ago, created a question with more than 1,000 views. For Kallisto-Sleuth or Kallisto-Deseq2?
Popular Question 8 months ago, created a question with more than 1,000 views. For Kallisto-Sleuth or Kallisto-Deseq2?
Voter 9 months ago, voted more than 100 times.
Epic Question 10 months ago, created a question with more than 10,000 views. For PCA in a RNA seq analysis
Popular Question 12 months ago, created a question with more than 1,000 views. For Kallisto-Sleuth or Kallisto-Deseq2?
Good Question 15 months ago, asked a question that was upvoted at least 5 times. For PCA in a RNA seq analysis
Appreciated 18 months ago, created a post with more than 5 votes. For PCA in a RNA seq analysis
Great Question 19 months ago, created a question with more than 5,000 views. For PCA in a RNA seq analysis
Prophet 19 months ago, created a post with more than 20 followers. For PCA in a RNA seq analysis
Popular Question 20 months ago, created a question with more than 1,000 views. For Kallisto or Deseq2?
Student 20 months ago, asked a question with at least 3 up-votes. For PCA in a RNA seq analysis
Popular Question 23 months ago, created a question with more than 1,000 views. For Kallisto or Deseq2?
Popular Question 2.2 years ago, created a question with more than 1,000 views. For PCA in a RNA seq analysis
Supporter 2.6 years ago, voted at least 25 times.

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