User: Puli Chandramouli Reddy

Reputation:
180
Status:
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Location:
Pune, India
Last seen:
1 week, 1 day ago
Joined:
1 year, 11 months ago
Email:
p********************@gmail.com

Posts by Puli Chandramouli Reddy

<prev • 41 results • page 1 of 5 • next >
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Comment: C: Visualization of Gene Ontology using bubble plot.
... I have not received the input file Agamy89 has used to test. If you are facing the same problem, post the input. ...
written 14 months ago by Puli Chandramouli Reddy180
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Comment: C: MITE hunter stops after step 2
... Can you check that blastall program can be called globally or you can export the the blasall to your path. Basically all the required program paths (complete) should have been given correctly while installing. I suggest once again try to install as I have mentioned in earlier reply. Best. ...
written 20 months ago by Puli Chandramouli Reddy180
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Comment: C: GENE ONTOLOGY TERMS LIST
... Hi, Not able to see the mentioned list. What is the study model organism? ...
written 20 months ago by Puli Chandramouli Reddy180
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Comment: C: MITE hunter stops after step 2
... If you have indexed genome in the same folder then it may not be the cause for error. change permissions to the folder using "sudo chmod 777 -R /home/my-user/MITE_hunter/mdust/ If these things do not work then the problem could be with the installation. Best ...
written 20 months ago by Puli Chandramouli Reddy180
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Comment: C: MITE hunter stops after step 2
... Have you indexed the genome you are giving after -i option. Try this after indexing. Else- You can try to change the privilege to mdust. You can also try to install folllowing way: #download and install Download from “http://target.iplantcollaborative.org/mite_hunter/MITE%20Hunter-11-2011.zip” ...
written 20 months ago by Puli Chandramouli Reddy180
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Comment: C: snRNA annotation in genome
... Sorry I assumed your are working on plants. to my knowledge there is no single effective tools to predict si/miRNA in animals due to differences in complementarity (except in some basal eumetazoans ). I found an interseting pipeline mentioned in [this][1] book chapter. Here, they used 1. structu ...
written 20 months ago by Puli Chandramouli Reddy180
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Answer: A: snRNA annotation in genome
... Both [snoscan][1] and [miR-PREFeR][2] can be used and are compatible with MAKER pipeline. For further reading about [it][3]. [1]: http://lowelab.ucsc.edu/snoscan/ [2]: https://github.com/hangelwen/miR-PREFeR [3]: http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_GMOD ...
written 21 months ago by Puli Chandramouli Reddy180
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Comment: A: Error in TRinity
... It appears paired-end reads in a single file. ...
written 21 months ago by Puli Chandramouli Reddy180
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Answer: A: Some examples of Intron aware aligner?
... Hi, If you want to map or align transcripts to genome then you can use Exonerate or NUCMER or BLAT. ...
written 22 months ago by Puli Chandramouli Reddy180
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Comment: C: Visualization of Gene Ontology using bubble plot.
... Can you post your topGO output. ...
written 22 months ago by Puli Chandramouli Reddy180

Latest awards to Puli Chandramouli Reddy

Scholar 7 months ago, created an answer that has been accepted. For A: Goat Genome gene prediction
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Fetching NCBI gene symbols from NCBI protein ids or GI identifiers
Scholar 23 months ago, created an answer that has been accepted. For A: Goat Genome gene prediction

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