User: Puli Chandramouli Reddy

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190
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Location:
Pune, India
Last seen:
6 months, 3 weeks ago
Joined:
2 years, 9 months ago
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Posts by Puli Chandramouli Reddy

<prev • 41 results • page 1 of 5 • next >
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Comment: C: Visualization of Gene Ontology using bubble plot.
... I have not received the input file Agamy89 has used to test. If you are facing the same problem, post the input. ...
written 2.0 years ago by Puli Chandramouli Reddy190
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Comment: C: MITE hunter stops after step 2
... Can you check that blastall program can be called globally or you can export the the blasall to your path. Basically all the required program paths (complete) should have been given correctly while installing. I suggest once again try to install as I have mentioned in earlier reply. Best. ...
written 2.5 years ago by Puli Chandramouli Reddy190
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Comment: C: GENE ONTOLOGY TERMS LIST
... Hi, Not able to see the mentioned list. What is the study model organism? ...
written 2.5 years ago by Puli Chandramouli Reddy190
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Comment: C: MITE hunter stops after step 2
... If you have indexed genome in the same folder then it may not be the cause for error. change permissions to the folder using "sudo chmod 777 -R /home/my-user/MITE_hunter/mdust/ If these things do not work then the problem could be with the installation. Best ...
written 2.5 years ago by Puli Chandramouli Reddy190
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Comment: C: MITE hunter stops after step 2
... Have you indexed the genome you are giving after -i option. Try this after indexing. Else- You can try to change the privilege to mdust. You can also try to install folllowing way: #download and install Download from “http://target.iplantcollaborative.org/mite_hunter/MITE%20Hunter-11-2011.zip” ...
written 2.5 years ago by Puli Chandramouli Reddy190
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Comment: C: snRNA annotation in genome
... Sorry I assumed your are working on plants. to my knowledge there is no single effective tools to predict si/miRNA in animals due to differences in complementarity (except in some basal eumetazoans ). I found an interseting pipeline mentioned in [this][1] book chapter. Here, they used 1. structu ...
written 2.6 years ago by Puli Chandramouli Reddy190
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Answer: A: snRNA annotation in genome
... Both [snoscan][1] and [miR-PREFeR][2] can be used and are compatible with MAKER pipeline. For further reading about [it][3]. [1]: http://lowelab.ucsc.edu/snoscan/ [2]: https://github.com/hangelwen/miR-PREFeR [3]: http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_GMOD ...
written 2.6 years ago by Puli Chandramouli Reddy190
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Comment: A: Error in TRinity
... It appears paired-end reads in a single file. ...
written 2.6 years ago by Puli Chandramouli Reddy190
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Answer: A: Some examples of Intron aware aligner?
... Hi, If you want to map or align transcripts to genome then you can use Exonerate or NUCMER or BLAT. ...
written 2.7 years ago by Puli Chandramouli Reddy190
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Comment: C: Visualization of Gene Ontology using bubble plot.
... Can you post your topGO output. ...
written 2.7 years ago by Puli Chandramouli Reddy190

Latest awards to Puli Chandramouli Reddy

Scholar 17 months ago, created an answer that has been accepted. For A: Goat Genome gene prediction
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Fetching NCBI gene symbols from NCBI protein ids or GI identifiers
Scholar 2.8 years ago, created an answer that has been accepted. For A: Goat Genome gene prediction

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