User: Puli Chandramouli Reddy

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150
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Location:
Pune, India
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Posts by Puli Chandramouli Reddy

<prev • 41 results • page 1 of 5 • next >
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Comment: C: Visualization of Gene Ontology using bubble plot.
... I have not received the input file Agamy89 has used to test. If you are facing the same problem, post the input. ...
written 7 months ago by Puli Chandramouli Reddy150
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Comment: C: MITE hunter stops after step 2
... Can you check that blastall program can be called globally or you can export the the blasall to your path. Basically all the required program paths (complete) should have been given correctly while installing. I suggest once again try to install as I have mentioned in earlier reply. Best. ...
written 13 months ago by Puli Chandramouli Reddy150
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Comment: C: GENE ONTOLOGY TERMS LIST
... Hi, Not able to see the mentioned list. What is the study model organism? ...
written 13 months ago by Puli Chandramouli Reddy150
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Comment: C: MITE hunter stops after step 2
... If you have indexed genome in the same folder then it may not be the cause for error. change permissions to the folder using "sudo chmod 777 -R /home/my-user/MITE_hunter/mdust/ If these things do not work then the problem could be with the installation. Best ...
written 13 months ago by Puli Chandramouli Reddy150
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Comment: C: MITE hunter stops after step 2
... Have you indexed the genome you are giving after -i option. Try this after indexing. Else- You can try to change the privilege to mdust. You can also try to install folllowing way: #download and install Download from “http://target.iplantcollaborative.org/mite_hunter/MITE%20Hunter-11-2011.zip” ...
written 13 months ago by Puli Chandramouli Reddy150
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Comment: C: snRNA annotation in genome
... Sorry I assumed your are working on plants. to my knowledge there is no single effective tools to predict si/miRNA in animals due to differences in complementarity (except in some basal eumetazoans ). I found an interseting pipeline mentioned in [this][1] book chapter. Here, they used 1. structu ...
written 14 months ago by Puli Chandramouli Reddy150
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Answer: A: snRNA annotation in genome
... Both [snoscan][1] and [miR-PREFeR][2] can be used and are compatible with MAKER pipeline. For further reading about [it][3]. [1]: http://lowelab.ucsc.edu/snoscan/ [2]: https://github.com/hangelwen/miR-PREFeR [3]: http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_GMOD ...
written 14 months ago by Puli Chandramouli Reddy150
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Comment: A: Error in TRinity
... It appears paired-end reads in a single file. ...
written 14 months ago by Puli Chandramouli Reddy150
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Answer: A: Some examples of Intron aware aligner?
... Hi, If you want to map or align transcripts to genome then you can use Exonerate or NUCMER or BLAT. ...
written 15 months ago by Puli Chandramouli Reddy150
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Comment: C: Visualization of Gene Ontology using bubble plot.
... Can you post your topGO output. ...
written 15 months ago by Puli Chandramouli Reddy150

Latest awards to Puli Chandramouli Reddy

Scholar 16 months ago, created an answer that has been accepted. For A: Goat Genome gene prediction

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