User: stanislav33

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Posts by stanislav33

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Finding promoter regions in bacteria
... I'm writing a program to find the promoter regions in bacteria. I though that the simple idea of getting let's say 100 nucleotides before the coding sequence on the DNA and calculating the consensus would work (at least would show some pattern). But, apparently, it doesn't. Let's say we've got E.co ...
bacteria promoter dna written 23 months ago by stanislav330 • updated 23 months ago by Asaf6.3k
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Answer: A: Mapping 16s rRNA to a tree (fast and best ways)
... No other responses on where to get the precomputed database itself? ...
written 23 months ago by stanislav330
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Comment: C: Mapping 16s rRNA to a tree (fast and best ways)
... Thanks, the site looks nice. Do they have precomputed rRNA trees there? ...
written 23 months ago by stanislav330
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Mapping 16s rRNA to a tree (fast and best ways)
... Hello. I have two tasks to do. 1) Map a signle 16s rRNA sequence to a phylogenetic tree. I also want to vizualize it so that the part of the tree which is close to my sequence is shown, but the rest of the tree is hidden (well, because of it's size). 2) Map a list of 16s rRNA sequences to a phylog ...
16s rrna map tree written 23 months ago by stanislav330

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