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Posts by philomath_physicus
... Hello, I have two queries w.r.t ASCAT CNV data: 1. How does one go about getting the total copy number for a given locus or chromosome from the ASCAT CNV.output results. What is the optimal way to filter the dataset to reduce the noise? 2. I would like to compare my dataset with some TCGA results ...
... Hello, I have a query about filtering Mutect2 somatic calls that have been annotated using SnpEff. Can I filter the calls in accordance with the recommended best practices, i.e. [blacklist/filter calls with DBSNP, Panel of Normals]? Will the annotations be valid afterwards? Thank you for your i ...
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