User: mg

gravatar for mg
mg0
Reputation:
0
Status:
New User
Last seen:
2 hours ago
Joined:
8 months, 1 week ago
Email:
m*********@hudsonalpha.org

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by mg

<prev • 3 results • page 1 of 1 • next >
0
votes
3
answers
4.2k
views
3
answers
Answer: A: How to extract specific chromosome from vcf file
... [bcftools](http://samtools.github.io/bcftools/bcftools-man.html#view) can be used, and this will preserve the header as well. bcftools view input.vcf.gz --regions chr1 To extract mutiple chromosomes pass them as comma separated. eg. `--regions chr1,chr5` ...
written 3 months ago by mg0
0
votes
1
answer
181
views
1
answer
Identifying coverage differences in two WGS platforms
... I am comparing data from two whole genome sequencing platforms and would like to find out if one platform covers certain regions better than others (and why)? Would you recommend any tool(s) to do such comparison? Also, one platform used hg19 as reference sequence as reference genome, whereas the ...
genome next-gen sequencing written 4 months ago by mg0 • updated 4 months ago by ATpoint5.5k
0
votes
6
answers
38k
views
6
answers
Comment: C: How To Split A Bam File By Chromosome
... Is it possible to specify output directory, and to mention which specify chromosome needs to be extracted (for eg., just chr5 and chr22)? ...
written 4 months ago by mg0

Latest awards to mg

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 979 users visited in the last hour