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- 10 months, 2 weeks ago
Posts by mg
... [bcftools](http://samtools.github.io/bcftools/bcftools-man.html#view) can be used, and this will preserve the header as well. bcftools view input.vcf.gz --regions chr1 To extract mutiple chromosomes pass them as comma separated. eg. `--regions chr1,chr5` ...
... I am comparing data from two whole genome sequencing platforms and would like to find out if one platform covers certain regions better than others (and why)? Would you recommend any tool(s) to do such comparison? Also, one platform used hg19 as reference sequence as reference genome, whereas the ...
... Is it possible to specify output directory, and to mention which specify chromosome needs to be extracted (for eg., just chr5 and chr22)? ...
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