User: pnatsidis

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pnatsidis0
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Posts by pnatsidis

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OMA Warning Unknown character U
... Hello, I just initiated an OMA run, and I get the following warning: WARNING: Unknown character: U (in gi|1035271291|ref|XP_008310584.2| PREDICTED: selenoprotein O [Cynoglossus semilaevis], CYSEM pos 689) --> X for almost all sequences. Can somebody tell me why U is an unknown character an ...
orthologs oma written 9 weeks ago by pnatsidis0 • updated 9 weeks ago by natasha.sernova2.8k
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Comment: C: OrthoFinder running time
... Thanks a lot for your answer!! How can I run OrthoFinder with the option of DIAMOND instead of BLAST? ...
written 3 months ago by pnatsidis0
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OrthoFinder running time
... Hello, I am running the OrthoFinder software for 34 species, average 20-30,000 proteins, except 4 of them which have ~60,000 genes. The BLAST all-v-all took 11 days to finish, and now it's on the Running OrthoFinder algorithm step. However I have no clue how much it will last. Anyone that has run O ...
gene next-gen rna-seq blast sequencing written 3 months ago by pnatsidis0 • updated 3 months ago by david_emms40

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