User: linouhao

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linouhao0
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1 year, 10 months ago
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Posts by linouhao

<prev • 12 results • page 1 of 2 • next >
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Answer: A: Can CVNkit call CNV correctly at HLA genes region?
... facets maybe a good choice, but I do not know how to annotate the segement results ...
written 5 months ago by linouhao0
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Comment: A: bam_sort_core problem when bam files be processed by samtools
... so is it really an error, and anyone knows to set -@ and -m, which is more useful when dealing with hundreds of bams at the same time in cluster, thanks a lot ...
written 9 months ago by linouhao0
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Comment: C: Why is normal blood used for matched tumor (instead of adjacent norm tissue)?
... so, how to get the control, thanks a lot. ...
written 10 months ago by linouhao0
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Comment: C: somatic variant calling with no germline sample
... hi, can you give a more detailed description about your last sentence “. If, on the other hand, the goal is to identify known cancer variants present in the samples being sequenced, having tumor only is not at all unusual and is a viable strategy.”, I want to know more, thanks a lot. ...
written 10 months ago by linouhao0
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Comment: C: somatic variant calling with no germline sample
... hi, is there special link for cnv white list? thanks a lot ...
written 10 months ago by linouhao0
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Comment: C: CNV calling on tumor sample with no germline counterpart
... hi,have you tried canvas? thanks a lot. ...
written 10 months ago by linouhao0
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Comment: C: Best CNV caller for Illumina WGRS data, in order to compare two phenotypes
... hi,do you kwow how to start canvas in Somatic-WGS, I do not know where is source UpdateEnvironmentMono and mono Canvas.exe Somatic-WGS,thanks a lot. ...
written 10 months ago by linouhao0
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Comment: C: Finding Variable Genes in Seurat, scRNA-seq
... yes, a bad picture ... ...
written 11 months ago by linouhao0
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Comment: C: Finding Variable Genes in Seurat, scRNA-seq
... can I ask how to get cutoff from function FindVariableGenes ...
written 11 months ago by linouhao0
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Comment: C: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
... I found Deseq2 used in package Seurat ...
written 11 months ago by linouhao0

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