User: linouhao

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linouhao0
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1 year, 4 months ago
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Posts by linouhao

<prev • 11 results • page 1 of 2 • next >
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Comment: A: bam_sort_core problem when bam files be processed by samtools
... so is it really an error, and anyone knows to set -@ and -m, which is more useful when dealing with hundreds of bams at the same time in cluster, thanks a lot ...
written 3 months ago by linouhao0
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Comment: C: Why is normal blood used for matched tumor (instead of adjacent norm tissue)?
... so, how to get the control, thanks a lot. ...
written 4 months ago by linouhao0
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Comment: C: somatic variant calling with no germline sample
... hi, can you give a more detailed description about your last sentence “. If, on the other hand, the goal is to identify known cancer variants present in the samples being sequenced, having tumor only is not at all unusual and is a viable strategy.”, I want to know more, thanks a lot. ...
written 4 months ago by linouhao0
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Comment: C: somatic variant calling with no germline sample
... hi, is there special link for cnv white list? thanks a lot ...
written 4 months ago by linouhao0
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Comment: C: CNV calling on tumor sample with no germline counterpart
... hi,have you tried canvas? thanks a lot. ...
written 4 months ago by linouhao0
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Comment: C: Best CNV caller for Illumina WGRS data, in order to compare two phenotypes
... hi,do you kwow how to start canvas in Somatic-WGS, I do not know where is source UpdateEnvironmentMono and mono Canvas.exe Somatic-WGS,thanks a lot. ...
written 4 months ago by linouhao0
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Comment: C: Finding Variable Genes in Seurat, scRNA-seq
... yes, a bad picture ... ...
written 4 months ago by linouhao0
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Comment: C: Finding Variable Genes in Seurat, scRNA-seq
... can I ask how to get cutoff from function FindVariableGenes ...
written 4 months ago by linouhao0
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Comment: C: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
... I found Deseq2 used in package Seurat ...
written 5 months ago by linouhao0
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Answer: A: How to adjust the position of chromosome or gene labels in OmicCircos
... let us send mails for the authors, I do not think the doc of omicscircos is nice. ...
written 8 months ago by linouhao0

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