User: venuraherath

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venuraherath10
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Posts by venuraherath

<prev • 10 results • page 1 of 1 • next >
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Forum: Workstation : More RAM or Faster RAM
... Hi Folks, I am wondering what is more appropriate for the workstations I am building mainly for WGA and RNAseq of Eukaryotic genomes. 1. 32-64 GB DDR4 RAM (2800 or 3000 MHz) vs 16 GB DDR4 RAM (3600 MHz) Motherboard is supporting 128 GB max RAM. I will be adding more RAM at one point currently ...
forum ram configuration workstation written 8 weeks ago by venuraherath10 • updated 8 weeks ago by Eli Korvigo140
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Answer: A: Installing IGV on Bio-linux 8 - Installing All Dependancies At Once
... Thank you Folks! I found the problem. It is because of the Java. I installed Java using sudo add-apt-repository ppa:webupd8team/java sudo apt-get update sudo apt-get install oracle-java8-installer Then downloaded binary files from IGV website and executed igv.jnlp Now it is running ...
written 6 months ago by venuraherath10
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Comment: C: Installing IGV on Bio-linux 8 - Installing All Dependancies At Once
... Please see the attached image. I get the error unable to locate the package. PS: igv is available in ubuntu software center though. ![Screenshot][1] [1]: https://image.ibb.co/bDRXky/Screen_Shot_2018_06_02_at_5_43_38_PM.png ...
written 6 months ago by venuraherath10 • updated 6 months ago by RamRS19k
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Installing IGV on Bio-linux 8 - Installing All Dependancies At Once
... Hi, I am wondering is there a way to install IGV on Biolinux without installing dependencies one by one? Thanks in advance. [Screenshot][1] [1]: https://ibb.co/hbGehd ...
biolinux install wgs written 6 months ago by venuraherath10
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Comment: C: Visualizing MEME results togeather with a Phylogenetic Tree
... Thank you so much! ...
written 7 months ago by venuraherath10
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Comment: C: Visualizing MEME results togeather with a Phylogenetic Tree
... Hi Shishuo, Thank you for the reply. I contacted Ivica (creator) of iTOL as well and requesting him to add that feature i.e. direct input MEME output. He told me if there are many requests he might consider if not "no". Thanks, Venura ...
written 7 months ago by venuraherath10
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Visualizing MEME results togeather with a Phylogenetic Tree
... Hi, Are there any programs/ tools available in order to achieve the above task? (Preferably a GUI solution than command line) Thank you in advance, Venura ...
phylogeny domain meme protein motif written 7 months ago by venuraherath10 • updated 7 months ago by Sishuo Wang140
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Comment: C: Downloading HMM profiles from Interpro
... Thank you Ashish. I want to use Domosaics program (combine domains, tree and alignment) unfortunately it no longer functional when it comes to Interproscan. Only work around is to get hmm profiles and do local search :( . ...
written 8 months ago by venuraherath10
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Comment: C: Downloading HMM profiles from Interpro
... Hi Jean-Karim, Thank you. I wrote to Protein families team at Interpro. They said download interproscan and there i will find the hmm signatures. It is a huge file and still downloading. Hopefully, HMMs will be there. Fingers crossed. ...
written 8 months ago by venuraherath10
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Downloading HMM profiles from Interpro
... Hi Folks, Is there anyway to download HMM profiles used in Interpro Search? If it is not possible how can I retrieve SMART hmm profiles. I dont fine hmm profiles in their ftp site. Thank in advance, Venura ...
protein sequence analysis hmm interpro written 8 months ago by venuraherath10 • updated 8 months ago by Jean-Karim Heriche17k

Latest awards to venuraherath

Scholar 6 months ago, created an answer that has been accepted. For A: Installing IGV on Bio-linux 8 - Installing All Dependancies At Once

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