User: jaqx008

gravatar for jaqx008
jaqx00890
Reputation:
90
Status:
Trusted
Location:
Last seen:
3 weeks, 1 day ago
Joined:
3 years, 3 months ago
Email:
j******@gmail.com

Posts by jaqx008

<prev • 322 results • page 1 of 33 • next >
0
votes
3
answers
25k
views
3
answers
Comment: A: Where To Download Hg19 Gene Annotation, Transcript Annotation And Cdna Fasta Fil
... This is old but I found the GTF https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/genes/ ...
written 22 days ago by jaqx00890
0
votes
1
answer
561
views
1
answer
ggmaplot error: Unlabeled data points (too many overlaps). Consider increasing max.overlaps
... Hello All. I am trying to create a differential expression with ggmaplot. I am using this because its more convenient for me to add specific gene labels. The issue is the labels are overlapping and some of them are being excluded from the plot. I am trying to add a label repel for this particular pl ...
maplot R ggplot2 ggmaplot written 5 weeks ago by jaqx00890 • updated 22 days ago by slanciano30
0
votes
0
answers
150
views
0
answers
Comment: C: How to convert bam to fasta
... Get bed with: bamTobed -i -o Get fasta with: bedtools getfasta -fi -bed bed_output_name -o your_desired.fasta ...
written 5 weeks ago by jaqx00890
1
vote
0
answers
150
views
0
answers
Comment: C: How to convert bam to fasta
... You can convert your bam to bed then use bedtools getfasta to convert the bed to fasta. ...
written 5 weeks ago by jaqx00890
0
votes
0
answers
95
views
0
answers
Comment: C: Adding separate color a list of genes in plotMA
... Thanks for your recommendation. I am not sure what you mean by external libraries. ...
written 6 weeks ago by jaqx00890
0
votes
0
answers
95
views
0
answers
Adding separate color a list of genes in plotMA
... Hello all and happy NEW YEAR. I am trying to create either plotMA, DESeq2 or VolcanoPlot such that in addition to the original plot (Usually in black and red) I can supply a list of genes (present in the plot) from the DESeq2 result to appear as separate colors (e.g green) in the plot. I haven't se ...
R deseq2 plotma rna-seq volcanoplot written 6 weeks ago by jaqx00890
0
votes
1
answer
197
views
1
answers
Comment: C: Why did my bowtie option (--no-unal) not present in the help?
... Its strange cos on my other devices I have it, but not in my magnolia account. And yes I am sure ...
written 4 months ago by jaqx00890
0
votes
1
answer
197
views
1
answer
Why is the bowtie option (--no-unal) not present in the help?
... Hello All, I realized my bowtie "--no-unal is not present in the help menu, hence I cant add the option when mapping. I have uninstalled and reinstalled bowtie but still same thing? Anyone know why this is? Mysterious. Help ...
alignment mapping bowtie written 4 months ago by jaqx00890
0
votes
1
answer
320
views
1
answers
Comment: C: Samtools view error:
... @ Istvan Albert I saw that I can edit the header with `samtools header` but not sure what the new header should read (what to include). ...
written 4 months ago by jaqx00890
0
votes
1
answer
320
views
1
answers
Comment: C: Samtools view error:
... Thank you. The link recommended adding --no-PG to the command. This did not really help. it produced the error error: node035: task 0: Exited with exit code 1 ...
written 4 months ago by jaqx00890

Latest awards to jaqx008

Popular Question 5 weeks ago, created a question with more than 1,000 views. For How to generate bed from fasta.
Popular Question 11 weeks ago, created a question with more than 1,000 views. For How to generate bed from fasta.
Popular Question 3 months ago, created a question with more than 1,000 views. For Entrez-efetch error. What could be wrong with my efetch usage?
Popular Question 3 months ago, created a question with more than 1,000 views. For How to generate bed from fasta.
Popular Question 4 months ago, created a question with more than 1,000 views. For How to generate bed from fasta.
Popular Question 5 months ago, created a question with more than 1,000 views. For How to generate bed from fasta.
Popular Question 5 months ago, created a question with more than 1,000 views. For How to generate bed from fasta.
Popular Question 5 months ago, created a question with more than 1,000 views. For How to generate bed from fasta.
Popular Question 5 months ago, created a question with more than 1,000 views. For GATK Variant calling
Great Question 10 months ago, created a question with more than 5,000 views. For DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
Popular Question 10 months ago, created a question with more than 1,000 views. For How to generate bed from fasta.
Popular Question 10 months ago, created a question with more than 1,000 views. For GATK Variant calling
Popular Question 10 months ago, created a question with more than 1,000 views. For Difficulty installing GATKtoolkit
Popular Question 10 months ago, created a question with more than 1,000 views. For Convert Tblastn result in .txt to .fasta
Popular Question 10 months ago, created a question with more than 1,000 views. For Interpreting DESeq2 Results
Popular Question 11 months ago, created a question with more than 1,000 views. For Convert Tblastn result in .txt to .fasta
Popular Question 12 months ago, created a question with more than 1,000 views. For Convert Tblastn result in .txt to .fasta
Popular Question 14 months ago, created a question with more than 1,000 views. For Convert Tblastn result in .txt to .fasta
Popular Question 14 months ago, created a question with more than 1,000 views. For Bedtools intersect error
Popular Question 18 months ago, created a question with more than 1,000 views. For GATK Variant calling
Epic Question 18 months ago, created a question with more than 10,000 views. For python script error: ImportError: No module named pysam
Popular Question 19 months ago, created a question with more than 1,000 views. For DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
Popular Question 20 months ago, created a question with more than 1,000 views. For Difficulty installing GATKtoolkit
Popular Question 21 months ago, created a question with more than 1,000 views. For Difficulty installing GATKtoolkit
Popular Question 21 months ago, created a question with more than 1,000 views. For Difficulty installing GATKtoolkit

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1040 users visited in the last hour
_