User: jaqx008
jaqx008 • 90
- Reputation:
- 90
- Status:
- Trusted
- Location:
- Last seen:
- 3 weeks, 1 day ago
- Joined:
- 3 years, 3 months ago
- Email:
- j******@gmail.com
Posts by jaqx008
<prev
• 322 results •
page 1 of 33 •
next >
0
votes
3
answers
25k
views
3
answers
... This is old but I found the GTF https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/genes/ ...
written 22 days ago by
jaqx008 • 90
0
votes
1
answer
561
views
1
answer
... Hello All. I am trying to create a differential expression with ggmaplot. I am using this because its more convenient for me to add specific gene labels. The issue is the labels are overlapping and some of them are being excluded from the plot. I am trying to add a label repel for this particular pl ...
0
votes
0
answers
150
views
0
answers
Comment:
C: How to convert bam to fasta
... Get bed with:
bamTobed -i -o
Get fasta with:
bedtools getfasta -fi -bed bed_output_name -o your_desired.fasta ...
written 5 weeks ago by
jaqx008 • 90
1
vote
0
answers
150
views
0
answers
Comment:
C: How to convert bam to fasta
... You can convert your bam to bed then use bedtools getfasta to convert the bed to fasta. ...
written 5 weeks ago by
jaqx008 • 90
0
votes
0
answers
95
views
0
answers
... Thanks for your recommendation. I am not sure what you mean by external libraries. ...
written 6 weeks ago by
jaqx008 • 90
0
votes
0
answers
95
views
0
answers
... Hello all and happy NEW YEAR.
I am trying to create either plotMA, DESeq2 or VolcanoPlot such that in addition to the original plot (Usually in black and red) I can supply a list of genes (present in the plot) from the DESeq2 result to appear as separate colors (e.g green) in the plot.
I haven't se ...
written 6 weeks ago by
jaqx008 • 90
0
votes
1
answer
197
views
1
answers
... Its strange cos on my other devices I have it, but not in my magnolia account. And yes I am sure ...
written 4 months ago by
jaqx008 • 90
0
votes
1
answer
197
views
1
answer
... Hello All,
I realized my bowtie "--no-unal is not present in the help menu, hence I cant add the option when mapping. I have uninstalled and reinstalled bowtie but still same thing? Anyone know why this is? Mysterious. Help ...
written 4 months ago by
jaqx008 • 90
0
votes
1
answer
320
views
1
answers
Comment:
C: Samtools view error:
... @ Istvan Albert
I saw that I can edit the header with `samtools header` but not sure what the new header should read (what to include). ...
written 4 months ago by
jaqx008 • 90
0
votes
1
answer
320
views
1
answers
Comment:
C: Samtools view error:
... Thank you. The link recommended adding --no-PG to the command. This did not really help. it produced the error
error: node035: task 0: Exited with exit code 1 ...
written 4 months ago by
jaqx008 • 90
Latest awards to jaqx008
Popular Question
5 weeks ago,
created a question with more than 1,000 views.
For How to generate bed from fasta.
Popular Question
11 weeks ago,
created a question with more than 1,000 views.
For How to generate bed from fasta.
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Entrez-efetch error. What could be wrong with my efetch usage?
Popular Question
3 months ago,
created a question with more than 1,000 views.
For How to generate bed from fasta.
Popular Question
4 months ago,
created a question with more than 1,000 views.
For How to generate bed from fasta.
Popular Question
5 months ago,
created a question with more than 1,000 views.
For How to generate bed from fasta.
Popular Question
5 months ago,
created a question with more than 1,000 views.
For How to generate bed from fasta.
Popular Question
5 months ago,
created a question with more than 1,000 views.
For How to generate bed from fasta.
Popular Question
5 months ago,
created a question with more than 1,000 views.
For GATK Variant calling
Great Question
10 months ago,
created a question with more than 5,000 views.
For DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
Popular Question
10 months ago,
created a question with more than 1,000 views.
For How to generate bed from fasta.
Popular Question
10 months ago,
created a question with more than 1,000 views.
For GATK Variant calling
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Difficulty installing GATKtoolkit
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Convert Tblastn result in .txt to .fasta
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Interpreting DESeq2 Results
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Convert Tblastn result in .txt to .fasta
Popular Question
12 months ago,
created a question with more than 1,000 views.
For Convert Tblastn result in .txt to .fasta
Popular Question
14 months ago,
created a question with more than 1,000 views.
For Convert Tblastn result in .txt to .fasta
Popular Question
14 months ago,
created a question with more than 1,000 views.
For Bedtools intersect error
Popular Question
18 months ago,
created a question with more than 1,000 views.
For GATK Variant calling
Epic Question
18 months ago,
created a question with more than 10,000 views.
For python script error: ImportError: No module named pysam
Popular Question
19 months ago,
created a question with more than 1,000 views.
For DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
Popular Question
20 months ago,
created a question with more than 1,000 views.
For Difficulty installing GATKtoolkit
Popular Question
21 months ago,
created a question with more than 1,000 views.
For Difficulty installing GATKtoolkit
Popular Question
21 months ago,
created a question with more than 1,000 views.
For Difficulty installing GATKtoolkit
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1040 users visited in the last hour