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User: jaqx008

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jaqx008 • 60
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Posts by jaqx008

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Comment: C: Course: Introduction to GWAS (BERLIN)
... Will there be an online section that people far away can Join to? I am very intersted in learning GWAS. Thanks ...
written 6 weeks ago by jaqx008 • 60
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Comment: C: How do I specify single end Read in CIRCquant?
... Yes I agree. I tested with a paired end it ran just fine. ...
written 7 weeks ago by jaqx008 • 60
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Comment: C: How do I specify single end Read in CIRCquant?
... Yes it doesnt work. at this point I just assume its not possible. Thanks for trying to help. ...
written 7 weeks ago by jaqx008 • 60
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Comment: C: How do I specify single end Read in CIRCquant?
... this is the publication and they mentioned it here > https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4316645/#Sec18title under > Optimal choice of parameters in CIRI ...
written 7 weeks ago by jaqx008 • 60
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How do I specify single end Read in CIRCquant?
... Hey everyone, I am trying to identify circular RNAs in my seq data using CIRCquant. I have read and understood the usage and all the files required I have generated. However, my reads are single end reads and the usage and manual for CIRIquant do not provide any option for single end reads input eve ...
rnaseq circularrna ciriquant bwa written 7 weeks ago by jaqx008 • 60 • updated 18 days ago by kevinzjy • 0
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Comment: A: Tophat Usage difficulty?
... Thanks for your responses and suggestions. I figured the command works if the last imputes on the command include a reference genome index folled by the fastq RNAseq file. Again thank you ...
written 9 weeks ago by jaqx008 • 60
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Tophat Usage difficulty?
... Hello All, I am having difficulty understanding and executing the tophat usage after looking up the help. its just not as simple as running other aligners like bowtie and I am needing help. below is the command I put together from what I understand. ( my reads are single end btw). can someone tell m ...
bowtie2 tophat alignment mapping written 10 weeks ago by jaqx008 • 60
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Comment: C: How do I determine if an mRNA was made with strand or non strand method?
... Thank you for your suggestion. the paper wasnt on ncbi. however, i was able to search key words and found the paper. I have see that the reads were non-strand. Thank you ...
written 11 weeks ago by jaqx008 • 60
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How do I determine if an mRNA was made with strand or non strand method?
... HI, I am trying to figure out if my transcriptomic data (downloaded from ncbi) was made using strand or non strand method. This information was not provided alongside the download page. Is there a way I can do this using the fastq file? Thanks ...
illumina strand vs non strand rna-seq written 11 weeks ago by jaqx008 • 60
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Comment: C: Confusion with 2nd Read pair SRA download
... Thank you I see it now on EBI-ENA ...
written 12 weeks ago by jaqx008 • 60

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