User: jaqx008

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jaqx00870
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Posts by jaqx008

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Answer: A: Small RNA length distribution
... As pointed above. you must have used the wrong adapters. I recommend that you use fastqc to check the quality of your reads. Overrepresented reads should reveal your adapter sequence. ...
written 4 months ago by jaqx00870
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Comment: C: Protein of un-clear function
... I am not so much worried about the expression since I can quantify the number of transcripts and use that to ascertain whether or not they are translated. I just want to predict the function based on what they do in other organisms. ...
written 5 months ago by jaqx00870
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Comment: C: Protein of un-clear function
... thank you @ Fatima for looking this up. I have also seen the DNA pol but When I look in other organisms it is not found making it really strange. I am looking through your searches now to see what I can make of it. ...
written 5 months ago by jaqx00870
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Comment: C: Protein of un-clear function
... Unfortunately, I am unable to perform any wet experiments on this as we do not have the animal models and the work is not particularly funded. We are just looking to use bioinformatics approach. ...
written 5 months ago by jaqx00870
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Protein of un-clear function
... Hello all, I am studying a group of small RNAs I believe are being generated from a particular spliced transcript. This transcript (below) as I saw in IGV are duplicated 3 times adjacent to each other. The sequences also have a pattern of repeats in them. Finding the function of this protein is hig ...
blast repeat sequences unknownfunction written 5 months ago by jaqx00870
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Functional analysis of potential small RNA population
... Hello, I am performing an analysis and I have a list of small RNA (possibly siRNA) that I obtained by bioinformatics approaches. I am trying to see if there is a tool I can use to find potential targets for this small RNAs and what is the best way to go about this? One paper suggested RNAhybrid but ...
sirna rna-seq mrna and te targets written 5 months ago by jaqx00870
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Comment: C: Low Complexity region determination using SEG
... Thank you. I have been able to execute the command using segmasker. again, thanks. ...
written 5 months ago by jaqx00870
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Comment: C: Low Complexity region determination using SEG
... Thanks for your response. I did ran into the following error while running make in the folder. part of the error is shown below. genwin.c:793:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] extern upper(string, len) ~~~~~~ ^ genwin.c:806:8: warning: type speci ...
written 5 months ago by jaqx00870
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Low Complexity region determination using SEG
... Hello all. I have a protein in fasta format and I am trying to make figures to show regions of low complexity with SEG program . Im not sure how to install the SEG program neither do I really understand the command execution. Can anyone assist me with this or provide me with a better alternative? Th ...
protein seg blast written 5 months ago by jaqx00870 • updated 5 months ago by Mensur Dlakic6.0k
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Comment: C: Plotting Bedgraph with multiple chromosome
... Thanks for your help. I am still unable to do this even after installing rtracklayer. The bedGraph wont come up except I type it and I still get error. > data.bg <- import("34regions.bg", format= "bedGraph") Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, ...
written 6 months ago by jaqx00870

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