User: jaqx008

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jaqx00840
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Posts by jaqx008

<prev • 244 results • page 1 of 25 • next >
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Comment: C: Interpreting DESeq2 Results (head)
... I get it now. Thanks ...
written 6 days ago by jaqx00840
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Interpreting DESeq2 Results (head)
... So I did a DESeq2 analysis with R and I dont understand the meanings of the Loci generated when I run > `head(result)` What is the difference between this result and the result generated with all the representative loci included? Thanks ...
result intepretation deseq2 written 6 days ago by jaqx00840 • updated 6 days ago by collmerr20
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Looking for recommendation: What tool can I use to reliably generate Transposable elements from a Genome?
... Hello, I currently have a TE.bed file that contains scaffold names not identical to those in the genome i am currently using. I am looking for a reliable tool to help generate all TE categories. I tried repeatmasker but I dont like the output file as only simple repeats and low-complexity TEs were c ...
te mapping repeat elements written 20 days ago by jaqx00840
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Comment: C: Recommendation needed: mRNA download
... So I somehow managed to play around different databases since the ncbi was still confusing and finally found the floridae database were I downloaded the fa file. but the fasta headers look like this >112690 >257564 etc. I want to convert this to a bed file. but the loci names in my original ge ...
written 22 days ago by jaqx00840
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Comment: C: Recommendation needed: mRNA download
... I think the sequence read achive are just set of RNA seq data and not mRNA data. ...
written 22 days ago by jaqx00840
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Comment: C: Recommendation needed: mRNA download
... The link https://www.biostars.org/p/295624/ was a guid to obtaining the human mRNA. I went to ncbi and was only able to see information/tutorial on *Homo sapien* ...
written 22 days ago by jaqx00840
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Recommendation needed: mRNA download
... Hey all, I would like to obtain or download mRNA data for an organism ( Amphioxus) is there a database where I can get it? ncbi was suggested but I couldn't navigate to it. can someone guide me or share a link please? I tried one guide on here and wasn't successful. Thanks ...
gene mrna refseq rna-seq written 22 days ago by jaqx00840 • updated 22 days ago by genomax64k
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Comment: C: DESeq2 Trouble shoot
... Thanks I think I understand it better now. Thanks again ...
written 24 days ago by jaqx00840
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Comment: C: DESeq2 Trouble shoot
... Thanks for your suggestion. have looked at the coldata and cts data. I have tried to adjust it in different ways but I am getting the same error and its frustrating. However, in my count data, if I remove the loci column, it generates my graph as expected, but I do need the loci info to be in the l ...
written 26 days ago by jaqx00840
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DESeq2 Trouble shoot
... Hey all, I recently succesfull rna DESeq2 analysis succesfully but I mad changes to my count table and wanting to rerun it in R. I encountered an error as before and followed all the steps I have written down in my documentation but still getting the error when I try to make dds. I could not figure ...
scatterplot dds deseq2 written 28 days ago by jaqx00840 • updated 28 days ago by Devon Ryan88k

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