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Posts by pinnintilikithreddy
... Hi, I used bowtie2 V184.108.40.206 1st Step- bowtie2-build -f /media/likith/REDDY/CANCERGENOMICS/NewFolder/hg38.fa hg38 Generated a list of files- hg38.1.bt2, hg38.2.bt2,hg38.3.bt2,hg38.4.bt2,hg38.fa, hg38.rev.1.bt2, hg38.rev.2.bt2 2nd Step- bowtie2 -x hg38 -1 /media/likith/REDDY/CANCERGENOMICS/NewFolder ...
... Hi, I tried to generated a .VCF file using GATK HaplotypeCaller. I provided all the input requirements hg38.fa, hg38.dict, hg38.fa.fi and Bam file. Java 1.8 and picard I'm getting this error, kindly reply. Command : java -jar GenomeAnalysisTK.jar -T HaplotypeCaller -R /home/likith/Downloads/Gen ...
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