User: sclittlerain

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Posts by sclittlerain

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Comment: A: RNA-seq analysis: How to output normalized counts or normalized FPKM values for
... Thanks, Hussain. I figure it out how to output the the normailzed counts using your suggestion. ...
written 3 days ago by sclittlerain0
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(Closed) RNA-seq analysis: How to generate a master gene expression matrix to do co-expression cross all conditions of my samples
... I am trying to perform gene co-expression analysis to identify the clusters of genes that co-express among all conditions of my samples (more than 2 conditions). To do that, I need to generate a master gene expression matrix that contain normalized counts or normalized FPKMs for each individual gene ...
rna-seq written 3 days ago by sclittlerain0
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RNA-seq analysis: How to output normalized counts or normalized FPKM values for all genes in each condition from DESeq2 pipeline?
... I am using a “star-featurecounts-DESeq2” pipeline to perform transcriptome comparison between several conditions (more than 2 conditions) of my samples. I noticed that my final differential expression lists contains only 7 columns: gene ID, baseMean,log2FoldChange,lfcSE,stat,pvalue and padj. I didn ...
rna-seq written 3 days ago by sclittlerain0

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