User: yarivtzur

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yarivtzur0
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Posts by yarivtzur

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Comment: C: Fasttree crashing out of memory when building large species tree
... It seems the issue is only happening with the FastTreeMP and FastTreeDbl versions that I downloaded, the regular FastTree executable successfully ran without running out of memory. Not sure why the other 2 versions failed, maybe I needed to compile them on my machine... ...
written 5 weeks ago by yarivtzur0
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Comment: C: Fasttree crashing out of memory when building large species tree
... At first the process was killed with a message printed "killed", and I could see it was killed by the OS in /var/log/messages for out of memory. Then I tried to limit its memory to 140 gb with ulimit -s 140000000 -v 140000000, and then the process died and prints "out of memory"... ...
written 6 weeks ago by yarivtzur0
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Fasttree crashing out of memory when building large species tree
... Hi, I am trying to use the latest Fasttree to construct a phylogenetic tree out of a nucleotide alignment of concatenated CDS of 2500 strains of Pseudomonas Aoruginosa (the alignment file is 5GB). I am running Fasttree on a strong server with 150Gb of ram, however Fasttree is unable to complete its ...
software error written 6 weeks ago by yarivtzur0

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