User: shivangi.agarwal800

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Posts by shivangi.agarwal800

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Comment: A: Pagerank of Hippie genes
... In addition, I want to know how to judge the importance of network nodes using centrality measures like degree, DMNC, MNC, MCC, EPC, bottleneck, eccentricity, closeness, radiality, betweenness, stress, clustering coefficient, pagerank.. Means that as we know the value of degree centrality is direct ...
written 3 hours ago by shivangi.agarwal80010
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Comment: C: Pagerank of Hippie genes
... Thanks a lot for your explanation ...
written 3 hours ago by shivangi.agarwal80010
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Comment: C: Pagerank of Hippie genes
... Can you please elaborate some more? ...
written 4 hours ago by shivangi.agarwal80010
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Comment: C: Pagerank of Hippie genes
... Thanks, I have calculated pagerank from igraph. It is fine, but when I am calculating eigen vector from igraph and comparing to the one calculated by centibin, I am getting different values, eg. My_Network_Edge_file v1,v2 1,2 1,3 1,4 2,5 2,3 2,4 3,6 3,4 6,4 ...
written 7 hours ago by shivangi.agarwal80010 • updated 1 hour ago by Ram15k
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(Closed) Mann whitney test
... Hi I want to perform a mann-whitney test in R, I am using following script on example dataset dataMW <- read.table("Mannwhitney.txt",h=T) attach(dataMW) names(dataMW) boxplot(length~sex, data = dataMW) wilcox.test(length~sex,mu=0,alt="two.sided",correct=TRUE, paired=FALSE, conf.int=TRUE, data ...
multiple dataset R mannwhitney written 4 days ago by shivangi.agarwal80010 • updated 4 days ago by b.nota4.3k
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Comment: C: Ttest on Rna-seq data
... Actually, I want to know for citing purpose. ...
written 6 days ago by shivangi.agarwal80010
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Comment: C: Ttest on Rna-seq data
... Is there any reference quoting this? ...
written 6 days ago by shivangi.agarwal80010
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Comment: C: Ttest on Rna-seq data
... Ok, if there is gene length also, then what would be the method to calculate gene expression? ...
written 6 days ago by shivangi.agarwal80010
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DE seq analysis using transcript expression data
... Hi How to perform DE seq analysis using transcript expression data? Regards ...
deseq transcript written 8 days ago by shivangi.agarwal80010 • updated 8 days ago by doctor.dee00560
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Comment: C: Ttest on Rna-seq data
... Ya sure The example data is: uc010dfa.1 0.1056 2.1825 ABCA10 uc002jhz.2 0.251 4.4502 ABCA10 uc010wqs.1 0.3977 5.294 ABCA10 ...
written 8 days ago by shivangi.agarwal80010

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