User: shivangi.agarwal800

Reputation:
50
Status:
Trusted
Location:
Last seen:
1 week, 1 day ago
Joined:
1 year, 3 months ago
Email:
s******************@gmail.com

Posts by shivangi.agarwal800

<prev • 71 results • page 1 of 8 • next >
0
votes
0
answers
48
views
0
answers
Regarding lollipop plot in GenVisR
... Hi I want to increase the font size of legends while plotting lollipop plot using **lolliplot** function. It is allowing me to change size of lolli points and text using **txtSize** and **pntSize** function, but I am not getting option to increase size of legends like domain name, type of mutation ...
genvisr lollipop plot written 13 days ago by shivangi.agarwal80050
0
votes
1
answer
103
views
1
answers
Comment: A: Error in biomart connection
... Thanks so much Smith. The given links are working. ...
written 13 days ago by shivangi.agarwal80050
5
votes
1
answer
103
views
1
answer
Error in biomart connection
... Hi When using following code in R, I am getting error lolliplot(mutation_data, fillCol="mutation_type", labelCol="amino_acid_change", proteinColour = "#ffffff", paletteB ="green", txtSize=3, txtAngle=20, host="dec2013.archive.ensembl.org") Using the following host: dec2013.archive.ensembl ...
R biomart ensembl written 13 days ago by shivangi.agarwal80050
0
votes
1
answer
206
views
1
answers
Comment: C: Installing Genomicdatacommon in r
... Resolved the above error by installing the package in R 3.5, but got another error. I followed the commands in Kevin post, all commands ran successfully, but when I was running on my file, it gave error, I ran the commands as : > library(GenomicDataCommons) > > manifest <- read.table(" ...
written 4 months ago by shivangi.agarwal80050
0
votes
1
answer
206
views
1
answers
Answer: A: Installing Genomicdatacommon in r
... For matching file id with TCGA barcodes, I am following Kevin post "Question: problem in matching the names between file names and patients Id in TCGA" https://www.biostars.org/p/318756/#318919 But getting error. Kindly suggest Regards Shivangi ...
written 4 months ago by shivangi.agarwal80050
0
votes
1
answer
206
views
1
answers
Comment: C: Installing Genomicdatacommon in r
... Thanks for your reply. No, there is nothing like that. All other things are working fine. ...
written 4 months ago by shivangi.agarwal80050
0
votes
1
answer
222
views
1
answers
Answer: A: Obtaining the CNA data
... Hi While unzipping TP.CopyNumberLowPass_Gistic2.aux.2016012800.0.0.tar.gz, there is GDAC_Gistic2Report_22529547_broad_data_by_genes.txt file. While looking into the contents, I got as GDAC_Gistic2Report_22529547_broad_data_by_genes.txt | cut -f-15 Gene Symbol Locus ID Cytoband TCGA-3C-AAAU-01A-11D ...
written 4 months ago by shivangi.agarwal80050
0
votes
1
answer
206
views
1
answer
Installing Genomicdatacommon in r
... Hi I am installing GenomicDataCommons in R, but when giving following command, getting error as: GenomicDataCommons::status() Error in curl::curl_fetch_memory(url, handle = handle) : Could not resolve host: gdc-api.nci.nih.gov Kindly suggest. Thanks in advance With regard ...
genomicdatacommon written 4 months ago by shivangi.agarwal80050 • updated 4 months ago by bioExplorer3.7k
0
votes
1
answer
222
views
1
answers
Comment: C: Obtaining the CNA data
... Have edited the original question ...
written 4 months ago by shivangi.agarwal80050
0
votes
1
answer
222
views
1
answers
Comment: C: Obtaining the CNA data
... I downloaded the data from Gistic and Cosmic, but I didnot get the data in the form I want. I want the data cancerwise, patientwise and genewise, like we get the expression data. From Gistic, I downloaded different files as: gdac.broadinstitute.org_BRCA-TP.CopyNumberLowPass_Gistic2.mage-tab.2016012 ...
written 4 months ago by shivangi.agarwal80050

Latest awards to shivangi.agarwal800

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 975 users visited in the last hour