User: hsiaoyi0504

gravatar for hsiaoyi0504
hsiaoyi050460
Reputation:
60
Status:
Trusted
Location:
Taiwan
Website:
https://hsiaoyi0504.gi...
Last seen:
4 days, 23 hours ago
Joined:
2 years, 6 months ago
Email:
h**********@gmail.com

Posts by hsiaoyi0504

<prev • 13 results • page 1 of 2 • next >
0
votes
3
answers
3.3k
views
3
answers
Answer: A: Converting between drug identifier formats
... Alternatively, use id mapping provided by unichem https://www.ebi.ac.uk/unichem/. More than 50 databases are processed to provide a full source mapping. ...
written 4 weeks ago by hsiaoyi050460
0
votes
2
answers
14k
views
2
answers
Comment: A: Split Vcf File Into Snps And Indels
... As an update, in my use cases, VCFtools aren't able to process my vcf files and will report that there are some errors. Specifically, the error is because Polyploidy was found, and it wasn't currently supported by vcftools. ...
written 7 weeks ago by hsiaoyi050460
0
votes
1
answer
1.6k
views
1
answers
Answer: A: parallel bwa mem with compressed fastq.bz2 files
... I am not pretty sure if the original author of this thread solves this problem, but for me, I use `bunzip -c` to do the decompression without creating the file in the input file directory. ...
written 3 months ago by hsiaoyi050460
0
votes
1
answer
26k
views
1
answers
Comment: C: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
... The reason why you got an error when building bcftools was that there is one missing dependency. Adding one more following then you will be fine: apt-get install -y libcurl4-openssl-dev ...
written 3 months ago by hsiaoyi050460
0
votes
11
answers
11k
views
11
answers
Answer: A: Bulk Download Of Ncbi Gene "Summary" Field
... I would like to provide another solution. You can process from raw data. Take a look of my repo: https://github.com/hsiaoyi0504/gene_dictionary. ...
written 19 months ago by hsiaoyi050460
0
votes
1
answer
1.1k
views
1
answers
Answer: A: gwas catalogue containing snp data from genome assembly hg19
... You can use liftover or CrossMap to switch between these two genome assembly version. ...
written 19 months ago by hsiaoyi050460
4
votes
1
answer
481
views
1
answer
What's the difference between GWAS Catalog and COSMIC database ?
... Hi there, I am new to analyze GWAS data. I see there are at least two major databases: - GWAS Catalog: https://www.ebi.ac.uk/gwas/home - COSMIC: https://cancer.sanger.ac.uk/cosmic It looks like they have similar dataset. Can anyone tell me what's the difference between this two databases ? ...
gwas snp written 19 months ago by hsiaoyi050460 • updated 19 months ago by Kevin Blighe61k
1
vote
3
answers
31k
views
3
answers
Answer: A: Obtaining The Snp Rs Number With The Chromosomal Position
... I would like to share another approach. Using EDirect (https://dataguide.nlm.nih.gov/edirect/install.html). Then you can get the result by running following command: `esearch -db snp -query chr_id[CHR] AND organism[ORGN] AND chr_pos[CPOS]` (modify `chr_id`, `organism`, `chr_pos` to fit your appl ...
written 20 months ago by hsiaoyi050460
0
votes
6
answers
17k
views
6
answers
Comment: C: Extract Sequence From The Genome?
... now it becomes https://www.biostars.org/p/56/. ...
written 20 months ago by hsiaoyi050460
1
vote
2
answers
834
views
2
answers
Comment: C: How can implement ensembl gene annotation pipeline for my data?
... Check this https://www.linode.com/docs/tools-reference/tools/find-files-in-linux-using-the-command-line/ ...
written 20 months ago by hsiaoyi050460

Latest awards to hsiaoyi0504

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1560 users visited in the last hour