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Posts by sridhar.rg
Answer: A: Blast - Formatting Output
... Just so you know, I was looking for this as well. The following did the job for me: blastn -db -query -out -outfmt "6 qseqid sseqid slen qstart qend length mismatch gapopen gaps sseq" -word_size 5 -perc_identity 80 The option "sseq" will give the sequence that the query was aligned with. T ...
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