User: Msadeghibiology91

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Posts by Msadeghibiology91

<prev • 16 results • page 1 of 2 • next >
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Comment: C: Samtools error sorting
... yes it is just an example. ...
written 3 hours ago by Msadeghibiology910
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Comment: C: Samtools error sorting
... I checked the size of sam file is 138.5 kB but unfortunately for bam file is 0 KB ,so it means i could not make bam file. ...
written 1 day ago by Msadeghibiology910
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Comment: C: Samtools error sorting
... I am inserting **samtools view alignments.bam | less -S** and I see : ~ ~ ~ ~ ~ ~ ~ (END) It might be my samtools have problem? ...
written 1 day ago by Msadeghibiology910
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Comment: C: Samtools error sorting
... now I updated samtools and due of opening sam file with *gedit*.I opended bam file with gedit . but I think I have misstake. you know should i see bam file like sam file with *gedit*? ...
written 1 day ago by Msadeghibiology910
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Comment: C: Samtools error sorting
... How can I update my existing samtools? ...
written 1 day ago by Msadeghibiology910
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Comment: C: bowtie build error
... Thanks I could solve my problems. ...
written 1 day ago by Msadeghibiology910
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Comment: C: Samtools error sorting
... Thank you dear Wouter DeCoster for your guidance to write comments. Cuase I'm not at work all right so I'll check my samtools version and if needed I'llupdate it. But another problem that I have ,when l inverted sam file to bam file and l opened bam file didn't see anything on my screen. So do y ...
written 1 day ago by Msadeghibiology910
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Comment: A: Samtools error sorting
... I insert it **samtools sort -o alignments_sorted.bam alignments.sam** then got it: **open: No such file or directory [bam_sort_core] fail to open file alignments_sorted.bam** what should I do?what does it mean? ...
written 2 days ago by Msadeghibiology910
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Samtools error sorting
... Hello everyone, I wanted to invert SAM file to BAM file SO I type these command: samtools view -b -S KY_1.sam > KY_1.bam samtools sort KY_1.bam KY_1.sorted then got this error...EOF marker is absent .The input is truncated. invalid BAM binary header. could you help me? ...
rna-seq written 3 days ago by Msadeghibiology910
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Answer: A: bowtie inspect error
... thank you dear Devon Ryan I get my answer ...
written 6 days ago by Msadeghibiology910

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