User: Msadeghibiology91

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Posts by Msadeghibiology91

<prev • 20 results • page 1 of 2 • next >
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Comment: A: galaxy run error
... thank you so much I understood that i forgot to change directory so it identified `sh`. ...
written 7 months ago by Msadeghibiology910
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galaxy run error
... hello every one I want to run galaxy and use it so I inserted this commands : $ git clone -b release_17.09 https://github.com/galaxyproject/galaxy.git $ sh run.sh but I got this error : > cannot run sh would you please help me? ...
rna-seq written 7 months ago by Msadeghibiology910
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Comment: C: Samtools error sorting
... many thanks ,It worked let me know that what does bam file give me? I want to understand description details in bam file. would you please help me? ...
written 7 months ago by Msadeghibiology910
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bowtie 2 alignment error
... Iinsert this command: bowtie -t -p 8 -n 1 -e 1 --best --sam -un DRR022467.unaligned.fastq mm9 DRR022467.fastq DRR022467.sam and got it: -u/--qupto arg must be at least 1 what is it mean? ...
rna-seq written 8 months ago by Msadeghibiology910 • updated 8 months ago by Santosh Anand3.9k
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Comment: C: Samtools error sorting
... yes it is just an example. ...
written 8 months ago by Msadeghibiology910
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Comment: C: Samtools error sorting
... I checked the size of sam file is 138.5 kB but unfortunately for bam file is 0 KB ,so it means i could not make bam file. ...
written 8 months ago by Msadeghibiology910
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Comment: C: Samtools error sorting
... I am inserting **samtools view alignments.bam | less -S** and I see : ~ ~ ~ ~ ~ ~ ~ (END) It might be my samtools have problem? ...
written 8 months ago by Msadeghibiology910
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Comment: C: Samtools error sorting
... now I updated samtools and due of opening sam file with *gedit*.I opended bam file with gedit . but I think I have misstake. you know should i see bam file like sam file with *gedit*? ...
written 8 months ago by Msadeghibiology910
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Comment: C: Samtools error sorting
... How can I update my existing samtools? ...
written 8 months ago by Msadeghibiology910
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Comment: C: bowtie build error
... Thanks I could solve my problems. ...
written 8 months ago by Msadeghibiology910

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