User: guliasitu40

gravatar for guliasitu40
guliasitu4080
Reputation:
80
Status:
Trusted
Location:
Last seen:
15 hours ago
Joined:
3 years, 1 month ago
Email:
g**********@gmail.com

Posts by guliasitu40

<prev • 23 results • page 1 of 3 • next >
0
votes
1
answer
99
views
1
answers
Comment: C: Module trait association in wgcna
... Lot of thanks Kevin, it worked perfectly fine. Sorry to bother you again, but I am getting negative scale independence (y-axis). I have also removed genes which were not suitable for the anlaysis. Does the negative scale dependence showing that my data don't follow the scale free topology or does it ...
written 4 weeks ago by guliasitu4080
0
votes
1
answer
99
views
1
answers
Comment: C: Module trait association in wgcna
... Thanks for the reply Kevin! Is the pink_module in your command contain only the genes names or expression values of the genes? and does mydata corresponds to traitdata that I have shown the the table? ...
written 4 weeks ago by guliasitu4080
1
vote
1
answer
99
views
1
answer
Module trait association in wgcna
... Hi all, I am using wgcna for coexpression analysis of time series data. I have 48 samples in total (16 time points with 3 replicates). I have identified different modules based on gene correlation across all samples. After this I want to associate these modules to trait of interest. I have categor ...
assembly alignment rna-seq R written 5 weeks ago by guliasitu4080 • updated 4 weeks ago by Kevin Blighe70k
0
votes
0
answers
226
views
0
answers
Assessment of the genome assembly
... Dear all, I have Illumina fastq reads of small eukaryotic genome (Chlamydomonas sp.). I am doing its genome assembly using Spades (de novo assembler) and after this I want to structurally and functionally annotate the genome. Before moving to annotation part, I should know the quality of the assembl ...
genome assembly sequence rna-seq gene written 4 months ago by guliasitu4080
0
votes
1
answer
221
views
1
answers
Comment: C: KEGG ID conversion to pathways
... Thanks, I will try this. Regards ...
written 4 months ago by guliasitu4080
0
votes
1
answer
221
views
1
answer
KEGG ID conversion to pathways
... Dear all, I have C. reinhardtii protein sequences and I have submitted these sequences into KAAS to get the KEGG ID to the corresponding protein sequence and got: Cre1 K07870 Cre2 K01952 Cre3 K20989 Cre4 K12667 Now, i want to convert these KEGG ids ...
gene R assembly rna-seq genome written 4 months ago by guliasitu4080 • updated 4 months ago by shelkmike370
1
vote
1
answer
799
views
1
answers
Comment: C: Gene Ontology Bubble Plot using ggplot2
... Great! Thanks. It now works perfectly. Sorry to disturb you so much. Thanks again ...
written 4 months ago by guliasitu4080
0
votes
1
answer
799
views
1
answers
Comment: C: Gene Ontology Bubble Plot using ggplot2
... Thanks for your response. I am using the same code that you have mentioned: ggplot(mydat, aes(y = reorder(GO_term, as.numeric(Type)), x = Number, size = Number)) + geom_point(aes(color = Class), alpha = 3.0) + geom_tile(aes(width = Inf, fill = Type), alpha = 0.2) + scale_fill_manual(values = ...
written 4 months ago by guliasitu4080
1
vote
1
answer
799
views
1
answers
Comment: C: Gene Ontology Bubble Plot using ggplot2
... Hi, Sorry to disturb you again. I am getting the desired result with your code but getting some strips darker than others. Is there any way to keep it uniform? I am getting something: ...
written 4 months ago by guliasitu4080
1
vote
1
answer
799
views
1
answers
Comment: C: Gene Ontology Bubble Plot using ggplot2
... Awesome! It worked perfectly. Thanks for your help. Cheers ...
written 5 months ago by guliasitu4080

Latest awards to guliasitu40

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1481 users visited in the last hour
_