User: ericrkofman

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ericrkofman10
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Posts by ericrkofman

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MutSig and hg38
... Can MutSig be run on hg38? Is it just that a new coverage file has to be generated with the updated genomic coordinates or would it be more of a heavy lift than this? If MutSig cannot be run on hg38, anybody know what the state-of-the-art equivalent is for hg38? Thanks. ...
mutsig hg38 written 16 months ago by ericrkofman10
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Answer: A: Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
... I ran into this issue too, and found no easy solutions online. So I made a quick script that could perform the conversion: [https://github.com/vanallenlab/EnsemblToHGNC][1] Hope it's helpful! The Ensembl/HGNC mapping it uses is a download from January 2018. [1]: https://github.com/vanallenlab/E ...
written 16 months ago by ericrkofman10

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