User: scottschu97

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scottschu9710
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Posts by scottschu97

<prev • 12 results • page 1 of 2 • next >
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RSkittleBrewer Not available
... Hi! I am currently trying to download and install a package called 'RSkittleBrewer' but the console is saying that it is not available for this version of R. Does anyone know how to solve this issue? Thank you! > biocLite("RSkittleBrewer") BioC_mirror: https://bioconductor.org U ...
R bioconductor rna-seq written 5 months ago by scottschu9710 • updated 29 days ago by Chao Tang0
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What are the Pros and Cons of working in Bioinformatics???
... Hi! I am currently an undergraduate student in the U.S. and I am considering a career working in bioinformatics. I am a Biology major but I love to program and have taught myself R and a little bit of a few other languages. I am pretty proficient in R as my research is conducted in R. For people ...
career bioinformatics bio job written 6 months ago by scottschu9710
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Comment: C: How do I create a Sleuth Wald Test
... Apologies, I have executed the line and did not include it in the post ...
written 6 months ago by scottschu9710
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How do I create a Sleuth Wald Test
... I am currently trying to check for differential expression between samples of AMD Macula and Control Macula. I have successfully created a linear regression test but I am having trouble creating a Wald Test. Here is my design table: > s2c sample tissue condition ...
R sleuth bioconductor rna-seq written 6 months ago by scottschu9710 • updated 6 months ago by Kevin Blighe25k
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Sleuth: What is the correct function for fitting my sleuth object
... I am looking at gene expression between four different tissue types: macula, macRPE, tissue, and retina with conditions of either AMD or No AMD I have the following design table: sample tissue condition 1 AMD_cornea.17 cornea AMD 2 AMD_macRPE.18 macRPE AMD 3 ...
R sleuth bioconductor rna-seq written 6 months ago by scottschu9710 • updated 6 months ago by Devon Ryan82k
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Sleuth plot_pca function Question
... I am plotting a PCA of some tissue samples that I have. The tissue types are: Macula Retina MacRPE Cornea Right now when I use this plot_pca function my PCA shows all tissue types. Is there something I can add to this function to exclude one or multiple tissue types? # Plot Basic PCA: pl ...
genome R sleuth rna-seq written 6 months ago by scottschu9710
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Comment: C: Error using BioMart. No encoding supplied.
... Thank you! This helped! ...
written 6 months ago by scottschu9710
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Comment: C: Error using BioMart. No encoding supplied.
... Thank you! It seems it was a small connection error. It is working fine now! ...
written 6 months ago by scottschu9710
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Error using BioMart. No encoding supplied.
... Does anyone know how to solve this error? I have never seen this error before and my current script has been working fine up until this point. > t2g <- biomaRt::getBM( + attributes = c("ensembl_transcript_id", "transcript_version", + "ensembl_gene_id", "exter ...
genome R biomart bio rna-seq written 7 months ago by scottschu9710 • updated 7 months ago by Mike Smith820
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Comment: C: Sleuth Error: System is computationally singular
... Thank you! The help is much appreciated! ...
written 7 months ago by scottschu9710

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