User: nick.carleson

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Posts by nick.carleson

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Answer: A: GATK: -nct and -nt
... Hmm that is not my understanding, but I could be reading the help docs wrong. I think -nct will still use the same number of CPU cores as if you were specifying -nt. So in your example, both would use 8 cores; it's just that those 8 cores would be controlled by a single "mother" thread. System memor ...
written 3 months ago by nick.carleson10
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Comment: C: Remove mitochondrial reads from BAM files
... It's also possible your original BAM kept the unmapped reads, and when you split the BAM into chromosomes the unmapped reads had nowhere to go. ...
written 10 months ago by nick.carleson10

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