User: pinn

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pinn70
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Genomics.

 

 

Posts by pinn

<prev • 65 results • page 1 of 7 • next >
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Comment: C: rnaQUAST-2.1.0/BUSCO, blast-2.10.0 multithreading problem?
... I'm also facing the same problem with BUSCO, as @sunnykevin97 pointed out. unable to install newest version. Can you show me how do I order of the conda channels, and install BUSCO at a new environment. ...
written 27 days ago by pinn70
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Comment: C: The gene names ending with *like suffix ?
... https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi try this. ...
written 4 weeks ago by pinn70
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Comment: C: Other then picard better way to calculate insertmetrics from a bam file ?
... Yes, I'm getting good distribution only with picard. ...
written 2.1 years ago by pinn70
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Comment: C: Other then picard better way to calculate insertmetrics from a bam file ?
... I tried with bamstats and alfred. ...
written 2.1 years ago by pinn70
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Comment: C: Other then picard better way to calculate insertmetrics from a bam file ?
... using bamstats I'm getting Mapping quality, readlength, editdistances, coverage depth, start positions I'm not able find insert metrics. ...
written 2.1 years ago by pinn70
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Comment: A: Other then picard better way to calculate insertmetrics from a bam file ?
... I able to retrieve the insert-metrics while comparison with other tools like picard its showing less insert-size. Picard shows very good distribution with read pairs information. ...
written 2.1 years ago by pinn70
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Comment: C: Other then picard better way to calculate insertmetrics from a bam file ?
... I'm not able to generate any histogram for insertsizes ? **##CMD##** ./reformat.sh -Xmx10g in1=/data/SRR_1.fastq in2=/data/SRR_2.fastq ihist=/data/SRR.sam out=SRR.hist Set insert size histogram output to /data/SRR.sam Set INTERLEAVED to false Unspecified format for out ...
written 2.1 years ago by pinn70 • updated 2.1 years ago by WouterDeCoster44k
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Other then picard better way to calculate insertmetrics from a bam file ?
... Hi, I tried with picard, I got the distributions is their any tool or AWK command I can directly extract from a sam/bam file ? thanks! ...
genome assembly next-gen alignment written 2.1 years ago by pinn70 • updated 2.1 years ago by trausch1.5k
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Comment: C: Properly paired sequences ?
... ![I totally agree, follow the link https://ibb.co/gTGx99 ...
written 2.1 years ago by pinn70
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Comment: C: Properly paired sequences ?
... Does this setting differ between the genome aligners ? Can i trust the samtools flag-stat statistic for properly paired sequences ...
written 2.1 years ago by pinn70

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Popular Question 22 months ago, created a question with more than 1,000 views. For GATK Unified Genotyper
Popular Question 22 months ago, created a question with more than 1,000 views. For VCF Genotyping (GT) ?
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Popular Question 22 months ago, created a question with more than 1,000 views. For VCF Normalisation is required ?
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Popular Question 22 months ago, created a question with more than 1,000 views. For VEP not downloading the data GRCh38
Popular Question 22 months ago, created a question with more than 1,000 views. For How to calculate genotype (GT) likelihoods ?
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