User: Sanjiv Kumar

gravatar for Sanjiv Kumar
Sanjiv Kumar20
Reputation:
20
Status:
New User
Location:
New Delhi, India
Website:
http://bioinformaticto...
Scholar ID:
Google Scholar Page
Last seen:
4 months, 1 week ago
Joined:
7 years, 5 months ago
Email:
d********@gmail.com

Currently, I am working on Mycobacterium tuberculosis on its protein characterization. My previous work was on diagnosis of Brucella melitensis. I like microbiology and into bioinformatics a lot. Other then these I am freelance blogger, like photography and adventure sports.

Posts by Sanjiv Kumar

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Error in building cufflinks
... Use http://cole-trapnell-lab.github.io/cufflinks/install/ to download pre-compiled library for your OS, to get working, while you try to solve building from source. I had tough time too building it from the source. ...
written 2.7 years ago by Sanjiv Kumar20
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Answer: A: Error in building cufflinks
... Someone in one of the google groups wrote this " rename version.p to version.hpp. This file is located in your samtools folder try to find version.p in /usr/local/include/bam and rename it to version.hpp" This method worked for me too. ...
written 2.7 years ago by Sanjiv Kumar20
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Answer: A: Metagenome Assembly Using Combined Reads Through Flash And Using Abyss For Assem
... Tony Raymond suggested: If you specify the paired end reads with the in parameter, everything should work. The se parameter is meant for single end reads like the ones that are merged with FLASH. so I issued following command nohup abyss-pe -j10 k=61 n=2 name=Assembly_1 se='../../Flash_k5_N ...
written 5.6 years ago by Sanjiv Kumar20
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Answer: A: How To Become A (Protein) Bioinformatician? - Skills
... I too am new to bioinformatics and I did my Ph. D. in biotechnology, Like you I too was attracted by some of the bioinformatic work going on in my lab. Some of my suggestions are as follows, however I would wish hard core bioinformaticians can shed more light on the questions you have asked. Openion ...
written 5.6 years ago by Sanjiv Kumar20
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Comment: C: Metagenome Assembly Using Combined Reads Through Flash And Using Abyss For Assem
... Thanks for the response and the link. I did the basic filtering of the data with respect to the quality control. Sorry about the missing information. The data is from a contaminated sewage water, so should be quite enriched and complex in term of taxonomic complexity, but that's a presumption. Y ...
written 5.6 years ago by Sanjiv Kumar20
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Metagenome Assembly Using Combined Reads Through Flash And Using Abyss For Assembly
... I am using Abyss for assembling paired end Illimuna metagenomic data after comparing forward and reverse reads in two different files and left owers in two other seperate files as follows: abyss-pe -j10 k=41 n=2 name=Assembly_1 lib='lib1' lib1='../Common_forword_1.fq ../Common_reverse_2.fq' se='.. ...
assembly written 5.6 years ago by Sanjiv Kumar20 • updated 4.1 years ago by Biostar ♦♦ 20

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Popular Question 5.5 years ago, created a question with more than 1,000 views. For Metagenome Assembly Using Combined Reads Through Flash And Using Abyss For Assembly
Autobiographer 5.5 years ago, has more than 80 characters in the information field of the user's profile.

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