User: E

gravatar for E
E0
Reputation:
0
Status:
New User
Last seen:
1 week, 1 day ago
Joined:
1 year, 4 months ago
Email:
e**********@gmx.at

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by E

<prev • 4 results • page 1 of 1 • next >
0
votes
0
answers
43
views
0
answers
RepeatMasker database differences between versions.
... Hi, I have a very general questions about repeat masker v4.0.7 and 4.0.8. After running both versions I got very different results. So I looked up the databases they use. Did I understand it correctly that repmasker v4.0.7 uses the dfam-consensus AND the repbase databases but v4.0.8 uses only t ...
opensource libraries repeatmasker repbase written 8 days ago by E0 • updated 8 days ago by WouterDeCoster39k
0
votes
0
answers
475
views
0
answers
miRDeep2: creating Rfam index not possible therefore no Rfam analysis
... Hi, I am trying to run miRDeep2. the subscript make_html.pl uses Rfam to find out more about the sRNAs in question. For this it must creates an bowtie index of the Rfam.fa to map the reads to it. My miRDeep2 however is located in a directory on a server where it does not have the permissions to ...
mirna annotation rfam mirdeep2 written 15 months ago by E0
0
votes
1
answer
471
views
1
answers
Comment: C: snRNA annotation in genome
... Hi Puli, thank you for the answer but I am not sure if I can use these tools. As far as I understand it, snoscans looks for 2'-O methylation sno guide RNAs and miR-PREFeR predicts miRNAs in plants. I am looking for a tool that allows me to annotate small RNAs (siRNAs, piRNAs, miRNAs) in a genome ...
written 16 months ago by E0
0
votes
1
answer
471
views
1
answer
snRNA annotation in genome
... Hi, I would like to annotate all small RNAs in a genome based on different databases (e.g. miRBase) with the purpose of generating a gff file I can use for further analysis (and to practice). I searched for tools to achieve this and my ideal tool has the following qualities: 1. I can provide var ...
annotation small rna rna-seq written 16 months ago by E0 • updated 15 months ago by Biostar ♦♦ 20

Latest awards to E

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1401 users visited in the last hour