User: dli

gravatar for dli
dli180
Reputation:
180
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Location:
WUSTL
Last seen:
9 months, 2 weeks ago
Joined:
5 years, 8 months ago
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about me

Posts by dli

<prev • 25 results • page 1 of 3 • next >
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Comment: C: how to find consensus sequence for repeats
... Thanks for you reply @genomax2. I am not actually looking for genomic sequence for copies, I am looking for consensus sequences. ...
written 20 months ago by dli180
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how to find consensus sequence for repeats
... Hi, I downloaded the rmsk.txt from UCSC genome browser, http://genome.ucsc.edu/cgi-bin/hgTables?db=hg38&hgta_group=rep&hgta_track=rmsk&hgta_table=rmsk&hgta_doSchema=describe+table+schema, I got following stuff: bin swScore milliDiv milliDel milliIns genoName genoStart genoEnd gen ...
genome repeat written 20 months ago by dli180
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Comment: C: Command-Line Software For Bigwig Data
... Thanks for sharing this nice tool, Andy! ...
written 4.1 years ago by dli180
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Answer: A: Best Genome Browser?
... The WashU Epigenome Browser have a cool feature called 'Juxtaposition', which brings user-defined genes/regions together for easy comparison view. Supporting flexible extension of regions/genes. For OP's question, simply right click on any gene track, choose 'Juxtapose', you will see all genes woul ...
written 4.1 years ago by dli180
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Comment: C: Searching For Mouse Regulatory Motifs
... Thank you very much :) ...
written 4.1 years ago by dli180
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Comment: C: Searching For Mouse Regulatory Motifs
... link seems not work anymore? ...
written 4.1 years ago by dli180
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Comment: C: Cage-Seq Data Analysish
... Thanks for reply. I think RNA-seq data was usually mapped to transcriptome instead of genome? Should I mapped the tags to cDNA then? ...
written 4.2 years ago by dli180
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Comment: C: Cage-Seq Data Analysish
... Nice suggestions! I will try :) ...
written 4.2 years ago by dli180
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Cage-Seq Data Analysish
... Hi, Is anyone have experience of CAGE-seq data analysis? Currently I did basic mapping to genome (Am I right that mapping to genome?). I have following specified questions actually: 1, do I need remove redundant mapped tags, i.e., tags mapped to same locations? 2, how did I do the normalization? ...
written 4.2 years ago by dli180 • updated 4.2 years ago by Mikael Huss4.5k
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Comment: C: Url To Download Sra Experiment_Package Xml File Programmatically
... yes, seems not work anymore. There is a similar post at SO with a solution: http://stackoverflow.com/questions/15855188/extract-xml-from-xml-embebed-in-html ...
written 4.4 years ago by dli180

Latest awards to dli

Appreciated 19 months ago, created a post with more than 5 votes. For A: Why Do I Need To Import Entrez Biopython Module Separately?
Popular Question 24 months ago, created a question with more than 1,000 views. For Cage-Seq Data Analysish
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: Convert .Map To .Bam
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: Why Do I Need To Import Entrez Biopython Module Separately?
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Seque

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