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Posts by hewm2008
... Here, I introduce [PopLDdecay](https://github.com/BGI-shenzhen/PopLDdecay ), a simple- efficient software for LD decay analysis, which processes the Variant Call Format VCF5 file to produce the LD decay statistics results and plot the LD decay graphs. The simple used : ./bin/PopLDdecay -InVC ...
... I thinks this software(PopLDdecay) can help you to draw LDdecay Figure directly, https://github.com/BGI-shenzhen/PopLDdecay The simplest usage ./bin/PopLDdecay -InVCF SNP.vcf.gz -OutStat LDdecay [#other para: -SubPop GroupA_sample.list] perl bin/Plot_OnePop.pl -inFile LDdecay ...
... This soft can help all of you https://github.com/BGI-shenzhen/BamSplit ...
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