User: hewm2008

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hewm200840
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Posts by hewm2008

<prev • 7 results • page 1 of 1 • next >
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Answer: A: Bootstrap & p distance distribution
... * 1) p_dis_X.mat is p distance matrix X=(1,2....100); To using the the part of the sites and new the nj-tree as above. Repeat For the NN times. X=(1,2....100); PHYLIPNEW-3.69.650/bin/fneighbor -datafile p_dis_X.matrix -outfile tree.out1_X.txt -matrixtype s -treetype n -outtreefil ...
written 11 months ago by hewm200840
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Comment: C: BAM File Export Coverage Values from IGV or using PySam/Samtools
... yes. ./BamDeal-0.21/bin/BamDeal_Linux statistics BasesCount ./BamDeal-0.21/bin/BamDeal_Linux statistics BasesCount Usage: BasesCount -List -OutPut -InList Input Bam/Sam File List -InFile Input Bam/Sam File File[repeat] ...
written 14 months ago by hewm200840
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Comment: C: LD-decay in a r2 vs distance(cm) plot
... I have already sent back the mail. any question are welcome. ...
written 16 months ago by hewm200840
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Answer: A: Counting mutated reads from RNA Seq data
... https://github.com/BGI-shenzhen/BamDeal ./BamDeal_Linux statistics BasesCount -List bam.list -OutPut outFix can give out each site four based depth ...
written 18 months ago by hewm200840
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Answer: A: Calculation of LD decay value in GWAS
... Here, I introduce [PopLDdecay](https://github.com/BGI-shenzhen/PopLDdecay ), a simple- efficient software for LD decay analysis, which processes the Variant Call Format VCF5 file to produce the LD decay statistics results and plot the LD decay graphs. The simple used : ./bin/PopLDdecay -InVC ...
written 2.1 years ago by hewm200840
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Answer: A: LD-decay in a r2 vs distance(cm) plot
... I thinks this software(PopLDdecay) can help you to draw LDdecay Figure directly, https://github.com/BGI-shenzhen/PopLDdecay The simplest usage ./bin/PopLDdecay -InVCF SNP.vcf.gz -OutStat LDdecay [#other para: -SubPop GroupA_sample.list] perl bin/Plot_OnePop.pl -inFile LDdecay ...
written 2.2 years ago by hewm200840
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Answer: A: How To Split A Bam File By Chromosome
... This soft can help all of you https://github.com/BGI-shenzhen/BamSplit ...
written 2.3 years ago by hewm200840

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