User: Janake

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Janake170
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10 months ago
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8 years, 1 month ago
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Posts by Janake

<prev • 18 results • page 1 of 2 • next >
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Comment: C: How to make a python script that compares two files
... Can you use "in" instead of "==" (http://www.tutorialspoint.com/python/membership_operators_example.htm)? Otherwise, you can use regular expression. Can you show a few lines of each file and how you want the comparison done? ...
written 4.7 years ago by Janake170
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Comment: C: compare and search a list of ids in two text file
... OK, it is a little more complicated than that. Perhaps, James's solution is easier for you, but for the completion of my answer, here is what you need to do: If you have R installed on your computer, open a terminal where your data files are and type R (upper case) to call R. I am going to call the ...
written 4.7 years ago by Janake170
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Answer: A: compare and search a list of ids in two text file
... If you don't need to user Perl, you can achieve this pretty easily in R. You can have your file1.txt and file2.txt and labelled your gene names columns as V1 and second column as V2 (or any other name you want). Then use merge function to merge the two files to get the common lines. common_fi ...
written 4.7 years ago by Janake170 • updated 6 months ago by RamRS27k
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Comment: C: Why the local blast and online blast produce different results?
... Are you sure that you downloaded the correct database? ...
written 5.4 years ago by Janake170
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Comment: C: clustering and assembly
... Perhaps, you can take a look at the following program: http://weizhongli-lab.org/cd-hit/ ...
written 5.4 years ago by Janake170
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Answer: A: clustering and assembly
... The reason we do clustering after assembly: After assembling short reads, you will get transcripts. One gene can have more than one transcript, depending on different splicing. As mentioned in the previous answer, clustering help to put all these similar sequences together and help to make a set of ...
written 5.5 years ago by Janake170
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Answer: A: Joining Paired-End Illumina Raw Reads
... Here is a good example to start: http://www.mothur.org/wiki/MiSeq_SOP ...
written 6.2 years ago by Janake170
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Comment: C: Making Annotated Chromosome Using Biopython
... Really sorry and will not happen again ...
written 6.2 years ago by Janake170
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Making Annotated Chromosome Using Biopython
... I am trying to recreate the annotated chromosome using biopython (http://biopython.org/DIST/docs/tutorial/Tutorial.html#sec345). I have a test code that would create one chromosome and one annotated feature (5, 10, "1", "Gm18_5133882_G_A", "blue"). from reportlab.lib.units import cm from Bio.Grap ...
biopython written 6.2 years ago by Janake170 • updated 3.9 years ago by nx810
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Comment: C: Ht Sequence Analysis With R And Bioconductor By The Bioinformatics Center At Uc
... This is one of the best tutorials I have seen on R. ...
written 7.5 years ago by Janake170

Latest awards to Janake

Great Question 20 months ago, created a question with more than 5,000 views. For Extracting An Up Stream Or Downstream Sequence From Given Position
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Making Annotated Chromosome Using Biopython
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Extracting An Up Stream Or Downstream Sequence From Given Position
Popular Question 4.7 years ago, created a question with more than 1,000 views. For Extracting An Up Stream Or Downstream Sequence From Given Position
Popular Question 4.7 years ago, created a question with more than 1,000 views. For Small Rna Analysis
Supporter 6.1 years ago, voted at least 25 times.
Appreciated 8.1 years ago, created a post with more than 5 votes. For Mirna Target Prediction
Student 8.1 years ago, asked a question with at least 3 up-votes. For Mirna Target Prediction
Appreciated 9.5 years ago, created a post with more than 5 votes. For Small Rna Analysis
Student 9.5 years ago, asked a question with at least 3 up-votes. For Small Rna Analysis
Popular Question 9.7 years ago, created a question with more than 1,000 views. For Extracting An Up Stream Or Downstream Sequence From Given Position

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