User: sandKings

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sandKings0
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Posts by sandKings

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Error in my DESeq script
... hahaha! rubber-duck debugging sounds very promising and discreet! Thanks! ...
written 10 days ago by sandKings0
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Comment: C: Error in my DESeq script
... While typing the response to your question, I figured out what I did wrong. The csv file which had my samples and treatments outlined, was for a different cell lineage. I accidentally copied the same file in 2 different folders. So, I didn't have the matching names in the countData. Thanks!! ...
written 10 days ago by sandKings0
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Error in my DESeq script
... Could someone please help me troubleshoot this line? `dds <- DESeqDataSetFromMatrix( countData, DataFrame(condition), ~ condition)` I get the error: Error in if (all(var == var[1])) { : missing value where TRUE/FALSE needed ...
R deseq rna-seq written 10 days ago by sandKings0
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Comment: C: Help with DESeqDataSetFromHTSeqCount?
... Ok! Thanks for pointing it out to me. ...
written 27 days ago by sandKings0
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Comment: C: Help with DESeqDataSetFromHTSeqCount?
... Sorry! Will pay more attention next time. ...
written 27 days ago by sandKings0
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Comment: A: Help with DESeqDataSetFromHTSeqCount?
... Thank you so much! It worked. I can replace 'dds' with 'ddsHTSeq'. Sorry, it's probably obvious but I barely know R as you can tell. as in: keep <- rowSums(counts(ddsHTSeq)) >= 10 dds <- ddsHTSeq[keep,] ...
written 27 days ago by sandKings0 • updated 27 days ago by WouterDeCoster25k
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Help with DESeqDataSetFromHTSeqCount?
... Hello everyone, My knowledge of R is mostly copy-pasting and a lot of googling. As of now, I have managed to successfully generate my HTSeq-count files with the help here. my count files constitutes of samples coming from same patients pre and post-treatment condition fileName pre p1.pre. ...
deseq2 deseqdatasetfromhtseqcount rna-seq written 27 days ago by sandKings0

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