User: max

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max20
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8 months, 3 weeks ago
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1 year, 9 months ago
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m**@soe.ucsc.edu

Posts by max

<prev • 7 results • page 1 of 1 • next >
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Answer: A: a webserver for the bigwig files
... See the UCSC docs https://genome.ucsc.edu/goldenpath/help/hgTrackHubHelp.html#Hosting One free option, at reduced speed, is Cyverse. Two other free options, with higher speed but limited file sizes, are Figshare and Github. As for the paid options, the UCSC page says this: --- In general, commer ...
written 8 months ago by max20
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Answer: A: BWA ALN cannot not find a very obvious match
... Sorry, this was stupid. I have to run bwa samse like this to get all matches: "bwa samse -n 100000000". Never mind. ...
written 14 months ago by max20
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Solved: BWA ALN cannot not find a very obvious match
... (Originally from Milan Simonovic posted on sourceforge but I could reproduce it and have the same problem, https://sourceforge.net/p/bio-bwa/mailman/message/36190558/) We have BWA at full sensitivity here and it still cannot find a very obvious sequence in zebrafish chr10. Any ideas what we're miss ...
alignment sam bwa written 14 months ago by max20 • updated 14 months ago by genomax74k
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Answer: A: How To Intersect Two Tracks In Ucsc Table Browser And Get Fields From Both?
... Use the UCSC Data Integrator to intersect two tables and keep both fields: https://genome.ucsc.edu/cgi-bin/hgIntegrator ...
written 22 months ago by max20
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Answer: A: USCS visualization track for genomic bins
... You can convert your file to bigWig format, see here: https://genome.ucsc.edu/goldenpath/help/bigWig.html Then just paste the bigWig file URL into the custom track box and it will be shown in the UCSC browser ...
written 22 months ago by max20
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Comment: A: UCSC Roadmap Epigenomics Hub: "Summary" tracks
... The hub information contains an email address at Wash U where you can ask the original authors a question. ...
written 22 months ago by max20
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Answer: A: cruzDB coordinates vs UCSC coordinates
... UCSC coordinates are 0-based and half-open internally (like cruzDB) but 1-based and closed in the html user interface. http://genomewiki.ucsc.edu/index.php/Coordinate_Transforms ...
written 22 months ago by max20

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