User: max

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max10
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2 months, 2 weeks ago
Joined:
10 months, 3 weeks ago
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m**@soe.ucsc.edu

Posts by max

<prev • 6 results • page 1 of 1 • next >
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Answer: A: BWA ALN cannot not find a very obvious match
... Sorry, this was stupid. I have to run bwa samse like this to get all matches: "bwa samse -n 100000000". Never mind. ...
written 3 months ago by max10
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Solved: BWA ALN cannot not find a very obvious match
... (Originally from Milan Simonovic posted on sourceforge but I could reproduce it and have the same problem, https://sourceforge.net/p/bio-bwa/mailman/message/36190558/) We have BWA at full sensitivity here and it still cannot find a very obvious sequence in zebrafish chr10. Any ideas what we're miss ...
alignment sam bwa written 3 months ago by max10 • updated 3 months ago by genomax59k
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Answer: A: How To Intersect Two Tracks In Ucsc Table Browser And Get Fields From Both?
... Use the UCSC Data Integrator to intersect two tables and keep both fields: https://genome.ucsc.edu/cgi-bin/hgIntegrator ...
written 10 months ago by max10
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Answer: A: USCS visualization track for genomic bins
... You can convert your file to bigWig format, see here: https://genome.ucsc.edu/goldenpath/help/bigWig.html Then just paste the bigWig file URL into the custom track box and it will be shown in the UCSC browser ...
written 10 months ago by max10
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Comment: A: UCSC Roadmap Epigenomics Hub: "Summary" tracks
... The hub information contains an email address at Wash U where you can ask the original authors a question. ...
written 10 months ago by max10
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Answer: A: cruzDB coordinates vs UCSC coordinates
... UCSC coordinates are 0-based and half-open internally (like cruzDB) but 1-based and closed in the html user interface. http://genomewiki.ucsc.edu/index.php/Coordinate_Transforms ...
written 10 months ago by max10

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