User: samche42
samche42 • 0
- Reputation:
- 0
- Status:
- New User
- Last seen:
- 5 months ago
- Joined:
- 1 year, 10 months ago
- Email:
- s*******@gmail.com
Profile information, website and location are not shown for new users.
This helps us discourage the inappropriate use of our site.
Posts by samche42
<prev
• 5 results •
page 1 of 1 •
next >
0
votes
0
answers
226
views
0
answers
... Hi
I've used a combination of BlastKoala and KEGG to find the presence and absence of genes in three related Burkholderia strains. I used the "Reconstruct Brite" option and 'viewed K00001". The resultant hierarchical list is exactly what I need as the presence/absence of each gene is indicated by ...
0
votes
0
answers
375
views
0
answers
... Hi!
I'm trying to create a single phylogenetic tree from a concatenation of 10 000 individual gene alignments.
I used OMA to find 10 000 orthologous genes from 23 bacterial genomes. I then used muscle to align sequences in multifasta files of each orthologous gene set using the following:
> mu ...
written 11 months ago by
samche42 • 0
0
votes
1
answer
310
views
1
answers
Comment:
C: Clarification of OMA tree metrics
... Thank you!! i really appreciate the help :) ...
written 11 months ago by
samche42 • 0
1
vote
1
answer
310
views
1
answer
... Hi!
I've used OMA 2.2.0 standalone to generate an estimated species tree from 34 genomes. The tree was successfully generated but I can't seem to find any explanations for the numbers on the tree. Are the node numbers the bootstrap values? Levels of similarity? And the scale bar? Is that a reflecti ...
0
votes
2
answers
1.3k
views
2
answers
... Hi there
I've successfully uploaded my metadata file and assembled, shotgun metagenomic dataet to my MG-RAST inbox. The metadata passed the QC-like step, my sequwnce data uploaded just fine and I could happily move on to the submission step. Everything works beautifully until I get to the tab where ...
written 22 months ago by
samche42 • 0
• updated
18 months ago by
himanshu.genetics • 0
Latest awards to samche42
Popular Question
7 months ago,
created a question with more than 1,000 views.
For Can't submit uploaded sequence data on MG-RAST
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 2348 users visited in the last hour