User: rimgubaev
rimgubaev • 70
- Reputation:
- 70
- Status:
- Trusted
- Location:
- Last seen:
- 5 days, 15 hours ago
- Joined:
- 9 months, 3 weeks ago
- Email:
- r********@gmail.com
Posts by rimgubaev
<prev
• 20 results •
page 1 of 2 •
next >
0
votes
0
answers
51
views
0
answers
... Hi, Everyone!
I want to annotate each line with factor variable (chain.lenght) like shown on the picture.![enter image description here][1]
Is it possible?
Here is my code:
ggplot(mz_rt, aes(rt, mz, size = acex, colour = as.factor(double.bonds))) +
geom_line(aes(group = as.factor(ch ...
written 12 days ago by
rimgubaev • 70
4
votes
0
answers
145
views
5 follow
0
answers
... Hello everyone! I wonder if somebody explain why FASTA format is called FASTA and what is the short history of it? ...
written 17 days ago by
rimgubaev • 70
10
votes
1
answer
218
views
7 follow
1
answer
... I have a table with TPM expression values for several samples (10-12) and I want to create PCA plot in order to estimate similarity of raplicates of a certain conditions. If it possible could you please suggest some pipelines or commands for R? ...
written 9 weeks ago by
rimgubaev • 70
• updated
9 weeks ago by
andrew.j.skelton73 ♦ 5.4k
0
votes
0
answers
64
views
0
answers
... It's not quite a bioinformatics question. Maybe you would suggest some other forum. And if you already faced this problem I would be grateful if you suggest some experimental papers where various concentration of phytohormones (Jasmonic and Salicylic acids are be preferable) have been applied and th ...
written 10 weeks ago by
rimgubaev • 70
9
votes
2
answers
241
views
2
answers
... Here is an example of volcano plot produced using edgeR results on DEG analysis. So my question is why there is no values in the middle of plot (indicated by red circle)?
![Volcano plot][1]
[1]: https://i.pinimg.com/originals/07/69/3d/07693dfcb3c8fe55fcae39d7caa64239.jpg ...
written 10 weeks ago by
rimgubaev • 70
• updated
10 weeks ago by
WouterDeCoster ♦ 34k
0
votes
1
answer
221
views
1
answers
... Now it's clear, thanks! ...
written 3 months ago by
rimgubaev • 70
7
votes
1
answer
221
views
1
answer
... This is a part of gff file for *Nicotiana tabacum* (tobacco) genome fasta. I must say that the fact that mRNA, gene, 1st exon and 1st CDS start at the same location (2309) is quite confusing! Any ideas?
NW_015787321.1 Gnomon gene 2309 5631 . + . ID=gene43;Dbxref=GeneID:107775605;Name=LOC10777 ...
written 3 months ago by
rimgubaev • 70
3
votes
2
answers
177
views
2
answers
... Solved this problem! I've written a small python scrip which generates tab-formatted text using Nsite output.
Here is the code:
import sys
import re
a = sys.argv[1] # reading of input filename (first argument)
b = sys.argv[2] # reading of output filename (second argument)
...
written 3 months ago by
rimgubaev • 70
4
votes
2
answers
605
views
2
answers
... Finally, I've solved this problem by combining samtools, bedtools as well as custom R script. The pipline placed into bash script is available [here](https://github.com/RimGubaev/extract_promoters). ...
written 4 months ago by
rimgubaev • 70
3
votes
2
answers
177
views
2
answers
... Hello everyone! I have an output from [NsiteM](http://www.softberry.com/berry.phtml?topic=nsitem&group=programs&subgroup=promoter) which represents a text with promoter analysis results. The text has a regular pattern:
1. QUERY: Gene1
Length of Query Sequence: ...
written 4 months ago by
rimgubaev • 70
Latest awards to rimgubaev
Scholar
3 months ago,
created an answer that has been accepted.
For A: How to extract all promoter regions in multi-fasta format from genome using GFF?
Teacher
3 months ago,
created an answer with at least 3 up-votes.
For A: How to extract all promoter regions in multi-fasta format from genome using GFF?
Scholar
3 months ago,
created an answer that has been accepted.
For A: How to extract all promoter regions in multi-fasta format from genome using GFF?
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: How to extract all promoter regions in multi-fasta format from genome using GFF?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1323 users visited in the last hour