User: luyang1005

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luyang10050
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Posts by luyang1005

<prev • 25 results • page 1 of 3 • next >
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Comment: C: jellyfish v 1.1.11 installation problem
... It works now!! Really helpful!! ...
written 20 hours ago by luyang10050
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Comment: C: jellyfish v 1.1.11 installation problem
... Thanks for this info. It works now. Appreciate it! ...
written 20 hours ago by luyang10050
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Comment: C: jellyfish v 1.1.11 installation problem
... Thanks for the remind. I went back to see, I use the command which -a jellyfish. Then I found the /usr/bin/ has installed the jellyfish version 2.2.3. However, that is the bin, and I do not have the sudo pemission. I just want to install it under my directory. How can I deal with this? Thanks so muc ...
written 20 hours ago by luyang10050
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jellyfish v 1.1.11 installation problem
... Hi, community, I run the kraken-build --build --db bacteria It told me I do not have jellyfish version 1. Then I install the jellyfish v1.1.11. Always cannot reach v1, but always reach v2. Since now jellyfish is version2. And since every time I install the jellyfish v1.1.11 source jellyfish-1.1.11. ...
next-gen sequencing written 21 hours ago by luyang10050
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Comment: C: shotgun metagenomic data analysis
... Hi, May I follow up a question? I installed the kraken, and when I run the DB configure, it told me that I did not have jellyfish. However, when I download the jellyfish v1.1.11 and installed. It is interesting to find out the installed jellyfish is v2.2.3. I have tried several times. The source is ...
written 21 hours ago by luyang10050
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Comment: C: shotgun metagenomic data analysis
... Thanks so much. I will try to see. ...
written 6 days ago by luyang10050
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Comment: C: shotgun metagenomic data analysis
... Hi, about Kraken I have some questions. I tried Kraken today. And I found that there were several version there. Minikaren4G, karen, and ect. May I have some suggestions from you which one could be better for me. Since my current purpose is only to look at the bacteria taxonomy profiling? ...
written 7 days ago by luyang10050
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Comment: C: shotgun metagenomic data analysis
... Thanks so much. I see. I will have a try. ...
written 7 days ago by luyang10050
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Comment: C: Paired-end reads analysis in Metaphlan2
... Hi, Now I am also at the same stage as you. Could you give me some suggestions on the paired-end shotgun data analysis? For using MetaPhlAn2, shall I need to merge the paired reads, and then use the MetaPhlAn2? Thanks in advance. ...
written 12 days ago by luyang10050
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shotgun metagenomic data analysis
... Hi, I am new to shotgun metagenomics. Currently, I got some data from shotgun metagenomics. And now I just want to know the general taxonomy of my data. Since then I can compare it with my 16S amplicon result to check the bias of the 16S data. Is there any clue to doing this? Thanks ...
sequencing written 15 days ago by luyang10050 • updated 8 days ago by willnotburn20

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