User: Mostafa Mahmoud

Reputation:
0
Status:
New User
Last seen:
1 week, 6 days ago
Joined:
2 years, 5 months ago
Email:
S*************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by Mostafa Mahmoud

<prev • 25 results • page 1 of 3 • next >
0
votes
0
answers
161
views
0
answers
Comment: C: Adding Gene Name attribute to CDS feature ??
... i just want cp the available in the gff annotation to cds and exon feature ...
written 6 weeks ago by Mostafa Mahmoud0
0
votes
0
answers
161
views
0
answers
Comment: C: Adding Gene Name attribute to CDS feature ??
... this my own id i am working on new version ...
written 6 weeks ago by Mostafa Mahmoud0
0
votes
0
answers
161
views
0
answers
Comment: C: Adding Gene Name attribute to CDS feature ??
... i have skills in annotation of non model organism but some times i stuck in simple stuff because my background is biology not computer science ...
written 6 weeks ago by Mostafa Mahmoud0
0
votes
0
answers
161
views
0
answers
Comment: C: Adding Gene Name attribute to CDS feature ??
... Chilo supperssalis denovo species ...
written 6 weeks ago by Mostafa Mahmoud0
0
votes
0
answers
161
views
0
answers
Adding Gene Name attribute to CDS feature ??
... how i can add Gene name (Name=value in Gene Feature ) att to CDS and exon feature?? chr1 transdecoder gene 11013482 11051446 . - . ID=CSG00000000267;Name=TWiK family of potassium channels protein 7-like isoform X1|1.20E-222| chr1 transdecoder mRNA 11013482 11051446 . - . ID=CSM000000002 ...
genome annotation gff written 6 weeks ago by Mostafa Mahmoud0
2
votes
1
answer
231
views
1
answer
Relate CDS annotation to parent gene
... i made gff annotation file with cds functional annotation i want add parent id to all transcript annotation including exon utr cds mrna and relate all of them to parent gene and change gene name by cds name [https://github.com/mostafaabuzaid25/test/blob/master/test.gff3] sample file ...
genome gff written 8 months ago by Mostafa Mahmoud0 • updated 8 months ago by Juke344.4k
0
votes
1
answer
661
views
1
answers
Comment: C: Perl script review
... i run it but it gives wrong mapping ################################################################# Running assemply on sample repA2 ################################################################# CMD: spades.py --rna -k 25 -t 6 -1 reads2.left.fq.gz reads2.right.fq -2 -m ...
written 20 months ago by Mostafa Mahmoud0
0
votes
1
answer
661
views
1
answers
Comment: C: Perl script review
... it just maps the parameters and read the sample and run every in sample file line one by one cat sample file cond_A cond_A_rep1 A_rep1_left.fq A_rep1_right.fq cond_A cond_A_rep2 A_rep2_left.fq A_rep2_right.fq cond_B cond_B_rep1 B_rep1_left.fq B_rep1_ ...
written 20 months ago by Mostafa Mahmoud0
0
votes
1
answer
661
views
1
answers
Comment: A: Perl script review
... actually, I am new to Perl I wrote this script to run spades by reading the samples one by one from a text file but when I run it shows nothing and I can't figure out where is the problem ??? ...
written 20 months ago by Mostafa Mahmoud0
3
votes
1
answer
661
views
1
answer
Perl script review
... I wrote Perl script to run spades commands but the script doesn't process the cmd #!/usr/bin/env perl use strict; use warnings; use Getopt::Long qw(:config no_ignore_case bundling); use FindBin; use Cwd; ###################################################### ## ...
perl spades written 20 months ago by Mostafa Mahmoud0 • updated 20 months ago by Michael Dondrup47k

Latest awards to Mostafa Mahmoud

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1104 users visited in the last hour