User: Emilie

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Emilie0
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Posts by Emilie

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Identifying direct repeats in flanking sequences of deletions
... Hi, I have performed NGS and have identified a list of genomic deletions indicated by genomic position. Now, I want to find out if deletions are flanked by direct repeats. I.e, for each individual deletion, are direct repeats presents (say in ~10bp from the deletion start/end point), but direct re ...
flanking sequence direct repeat deletion written 5 days ago by Emilie0
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Mapping to circular genome (mtDNA)
... Hi, I am working on detection of mitochondrial DNA mutations. I have performed sequencing of mtDNA from mice, and am using MapSplice2 for further analysis. I was getting some unexpected results (or rather, I was lacking some expected large deletions) with MapSplice2. I looked at the coverage acro ...
genome alignment mapsplice written 11 months ago by Emilie0

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