User: F.I.2011

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F.I.201110
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1 year, 10 months ago
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2 years, 5 months ago
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f*************@monash.edu

Posts by F.I.2011

<prev • 6 results • page 1 of 1 • next >
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Can IGV be used to visualize Mitogenome readpools
... Hello everyone, I am struggling to use IGV to visualize my readspools against my reference Mitogenome. It is avian mitogenome. I upload new genome by downloading FASTA and GFF3 file. For the workflow: I convert paired end reads (R1 and R2) into bam file by this command: java -jar ----picar ...
igv written 2.1 years ago by F.I.201110 • updated 2.1 years ago by Benn8.0k
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MrBayes tree in RAxML
... Hi, I am new in Phylogenetics and therefor asking naive question. Can I use tree generated in MrBayes in RAxML to get Bootstrap support or i have to generate a new tree with same .phy file and manually compare Bootstrap values with Posterior probability values for every node. ...
raxml written 2.3 years ago by F.I.201110 • updated 2.3 years ago by h.mon30k
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Comment: C: error in execution of Trimmomatic 0.36
... thanks for helping, yes you caught the exact culprits... First i was not in correct folder. i went to FQ-1 folder second I have already been changed the name of input files but repeatedly using old command with old names. ...
written 2.4 years ago by F.I.201110
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Comment: A: error in execution of Trimmomatic 0.36
... I think i did it: ~/Desktop/Farheena/41 /FQ-1$ java -jar ~/Desktop/Farheena/Trimmomatic-0.36/trimmomatic-0.36.jar PE -threads 4 -phred33 -trimlog FQ-1_log FQ-1_R1_001.fastq FQ-1_R2_001.fastq FQ-1_forward_paired.fq FQ-1_forward_unpaired.fq FQ-1_reverse_paired.fq FQ-1_reverse_unpaired.fq ILLUMIN ...
written 2.4 years ago by F.I.201110 • updated 2.4 years ago by genomax85k
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Comment: A: error in execution of Trimmomatic 0.36
... thanks for replying, i correct that mistake but then again it didn't solve my problem. It look like there are many script problems. i modified my command java -jar ~/Desktop/Farheena/Trimmomatic-0.36/trimmomatic-0.36.jar PE -threads 4 -phred33 -trimlog FQ-1_log FQ-1_S56_L001_R1_001.fastq FQ-1 ...
written 2.4 years ago by F.I.201110 • updated 2.4 years ago by genomax85k
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error in execution of Trimmomatic 0.36
... I am new in Linux and Trimmomatic , do after installation i need to run it by any specific command **I am using this command:** mohana@monash-Precision-T3600:~$ java -jar ~/Desktop/Farheena/Trimmomatic-0.36/trimmomatic-0.36.jar PE -threads 8 -phred33 -trimlog FQ-1_log home/desktop/Farheena/41 F ...
software error written 2.4 years ago by F.I.201110 • updated 2.4 years ago by genomax85k

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