User: ChrisM

gravatar for ChrisM
ChrisM10
Reputation:
10
Status:
New User
Location:
Seattle
Last seen:
10 months ago
Joined:
10 months, 1 week ago
Email:
c*******@uw.edu

Posts by ChrisM

<prev • 3 results • page 1 of 1 • next >
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OMA output does not match settings
... Hi, I'm using OMA (https://omabrowser.org/oma/genomePW/) to find orthologues between bacterial species and I'm having trouble retrieving gene names that can be matched to those in the corresponding genbank file, whether it be refseq IDs, gene names, etc. For example: Bacillus subtilis 168 vs. Bacill ...
oma orthologue written 10 months ago by ChrisM10 • updated 7 months ago by adrian.altenhoff440
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Comment: C: How can I identify all homologues between two fully assembled genomes?
... Thank you! Also, after much searching, I also found: https://omabrowser.org/oma/genomePW/ which has been fantastic. ...
written 10 months ago by ChrisM10
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How can I identify all homologues between two fully assembled genomes?
... I'm trying to identify the homologues of all genes between two fully assembled bacterial genomes (e.g. Bacillus subtilis and Staphylococcus aureus) in batch. It looks like relevant data are available on the NCBI COG database, but their 2012 COG software won't compile so I haven't been able to attemp ...
bacteria cogs written 10 months ago by ChrisM10 • updated 10 months ago by genomax59k

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