User: appiahv

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appiahv0
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Posts by appiahv

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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
... I have 14 samples of exome sequence for cancer and I am looking to find snps which are under selection. However I dont have control samples and so I intend to use one population(african ancestry) as control. I have downloaded the raw fastq exome data (59 samples) from 1000 genome website, created ...
written 4 weeks ago by appiahv0
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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
... Thanks Kevin, in the end I decided to merge them *1*.fastq.gz >merged_R1.fastq.gz *2*.fastq.gz>merged_R2.fastq.gz I think this will give me high coverage. ...
written 4 weeks ago by appiahv0
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Comment: A: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
... Hey Kevin, I am attempting to download exome samples from 1000 genome phase3. What I realized was that some individuals have multiple files eg. this individual( https://www.internationalgenome.org/data-portal/sample/NA18505 ) ha the following files SRR096669.filt.fastq.gz SRR096669_1.filt.f ...
written 4 weeks ago by appiahv0 • updated 4 weeks ago by Kevin Blighe61k
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Comment: A: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
... Hi Kevin, I have an exome data of african ancestry with just 1 phenotype. And I would like to use exome data from 1000 genome project as a control and identify snps under selection. I realized that the vcf is for whole genome sequence. Is there anyway to preprocess the vcf so that I get just the ex ...
written 4 weeks ago by appiahv0

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